| Small and mighty: adaptation of superphylum Patescibacteria to groundwater environment drives their genome simplicity R Tian, D Ning, Z He, P Zhang, SJ Spencer, S Gao, W Shi, L Wu, Y Zhang, ... Microbiome 8, 1-15, 2020 | 224 | 2020 |
| Natural bacterial communities serve as quantitative geochemical biosensors MB Smith, AM Rocha, CS Smillie, SW Olesen, C Paradis, L Wu, ... MBio 6 (3), 10.1128/mbio. 00326-15, 2015 | 209 | 2015 |
| Advances in monitoring environmental microbes TC Hazen, AM Rocha, SM Techtmann Current opinion in biotechnology 24 (3), 526-533, 2013 | 97 | 2013 |
| Microbial functional gene diversity predicts groundwater contamination and ecosystem functioning Z He, P Zhang, L Wu, AM Rocha, Q Tu, Z Shi, B Wu, Y Qin, J Wang, Q Yan, ... MBio 9 (1), 10.1128/mbio. 02435-17, 2018 | 65 | 2018 |
| Molybdenum availability is key to nitrate removal in contaminated groundwater environments MP Thorgersen, WA Lancaster, BJ Vaccaro, FL Poole, AM Rocha, ... Applied and environmental microbiology 81 (15), 4976-4983, 2015 | 52 | 2015 |
| Small and mighty: adaptation of superphylum Patescibacteria to groundwater environment drives their genome simplicity. Microbiome 8: 51 R Tian, D Ning, Z He, P Zhang, SJ Spencer, S Gao, W Shi, L Wu, Y Zhang, ... S40168-020-00825-W/FIGURES/5, 2020 | 48 | 2020 |
| Large circular plasmids from groundwater plasmidomes span multiple incompatibility groups and are enriched in multimetal resistance genes A Kothari, YW Wu, JM Chandonia, M Charrier, L Rajeev, AM Rocha, ... MBio 10 (1), 10.1128/mbio. 02899-18, 2019 | 39 | 2019 |
| Construction of viable soil defined media using quantitative metabolomics analysis of soil metabolites S Jenkins, TL Swenson, R Lau, AM Rocha, A Aaring, TC Hazen, ... Frontiers in microbiology 8, 324694, 2017 | 39 | 2017 |
| Spice: discovery of phenotype-determining component interplays Z Chen, K Padmanabhan, AM Rocha, Y Shpanskaya, JR Mihelcic, K Scott, ... BMC Systems Biology 6, 1-19, 2012 | 17 | 2012 |
| Rapid detection of microbial cell abundance in aquatic systems AM Rocha, Q Yuan, DM Close, KB O’Dell, JL Fortney, J Wu, TC Hazen Biosensors and Bioelectronics 85, 915-923, 2016 | 16 | 2016 |
| Incorporation of leucine and thymidine by estuarine phytoplankton: implications for bacterial productivity estimates MR Mulholland, AM Rocha, GE Boneillo Estuaries and coasts 34, 310-325, 2011 | 15 | 2011 |
| Natural bacterial communities serve as quantitative geochemical biosensors. mBio 6 MB Smith, AM Rocha, CS Smillie, SW Olesen, C Paradis, L Wu, ... | 14 | 2015 |
| Efficient α, β-motif finder for identification of phenotype-related functional modules MC Schmidt, AM Rocha, K Padmanabhan, Z Chen, K Scott, JR Mihelcic, ... BMC bioinformatics 12, 1-15, 2011 | 14 | 2011 |
| DENSE: efficient and prior knowledge-driven discovery of phenotype-associated protein functional modules W Hendrix, AM Rocha, K Padmanabhan, A Choudhary, K Scott, ... BMC systems biology 5, 1-13, 2011 | 12 | 2011 |
| The multiple alignment algorithm for metabolic pathways without abstraction W Chen, AM Rocha, W Hendrix, M Schmidt, NF Samatova 2010 IEEE International Conference on Data Mining Workshops, 669-678, 2010 | 10 | 2010 |
| Microbial functional gene diversity predicts groundwater contamination and ecosystem functioning. mBio 9: e02435-17 Z He, P Zhang, L Wu, AM Rocha, Q Tu, Z Shi, B Wu, Y Qin, J Wang, Q Yan, ... | 9 | 2018 |
| Construction of viable soil defined media using quantitative metabolomics analysis of soil metabolites. Front Microbiol 8: 2618 S Jenkins, TL Swenson, R Lau, AM Rocha, A Aaring, TC Hazen, ... | 9 | 2017 |
| Peculiar citric acid cycle of hydrothermal vent chemolithoautotroph Hydrogenovibrio crunogenus, and insights into carbon metabolism by obligate autotrophs I Quasem, AN Achille, BA Caddick, TA Carter, C Daniels, JA Delaney, ... FEMS Microbiology Letters 364 (14), fnx148, 2017 | 8 | 2017 |
| NIBBS-search for fast and accurate prediction of phenotype-biased metabolic systems MC Schmidt, AM Rocha, K Padmanabhan, Y Shpanskaya, J Banfield, ... PLoS computational biology 8 (5), e1002490, 2012 | 7 | 2012 |
| In-silico identification of phenotype-biased functional modules K Padmanabhan, K Wilson, AM Rocha, K Wang, JR Mihelcic, ... Proteome Science 10, 1-10, 2012 | 6 | 2012 |
Terry HazenGovernor's Chair Professor, University of Tennessee & Oak Ridge National LaboratoryVerified email at utk.edu
