Marius Pachitariu
Marius Pachitariu
HHMI Janelia
Verified email at - Homepage
Cited by
Cited by
Fully integrated silicon probes for high-density recording of neural activity
JJ Jun, NA Steinmetz, JH Siegle, DJ Denman, M Bauza, B Barbarits, ...
Nature 551 (7679), 232-236, 2017
Cellpose: a generalist algorithm for cellular segmentation
C Stringer, T Wang, M Michaelos, M Pachitariu
Nature methods 18 (1), 100-106, 2021
Spontaneous behaviors drive multidimensional, brainwide activity
C Stringer, M Pachitariu, N Steinmetz, CB Reddy, M Carandini, KD Harris
Science 364 (6437), 255, 2019
Kilosort: realtime spike-sorting for extracellular electrophysiology with hundreds of channels
M Pachitariu, N Steinmetz, S Kadir, M Carandini, KD Harris
BioRxiv, 2016
Suite2p: beyond 10,000 neurons with standard two-photon microscopy
M Pachitariu, C Stringer, S Schröder, M Dipoppa, LF Rossi, M Carandini, ...
BioRxiv, 061507, 2016
Neuropixels 2.0: A miniaturized high-density probe for stable, long-term brain recordings
NA Steinmetz, C Aydin, A Lebedeva, M Okun, M Pachitariu, M Bauza, ...
Science 372 (6539), eabf4588, 2021
High-dimensional geometry of population responses in visual cortex
C Stringer, M Pachitariu, N Steinmetz, M Carandini, KD Harris
Nature, 1, 2019
Learning enhances sensory and multiple non-sensory representations in primary visual cortex
J Poort, AG Khan, M Pachitariu, A Nemri, I Orsolic, J Krupic, M Bauza, ...
Neuron 86 (6), 1478-1490, 2015
Survey of spiking in the mouse visual system reveals functional hierarchy
JH Siegle, X Jia, S Durand, S Gale, C Bennett, N Graddis, G Heller, ...
Nature 592 (7852), 86-92, 2021
Thirst regulates motivated behavior through modulation of brainwide neural population dynamics
WE Allen, MZ Chen, N Pichamoorthy, RH Tien, M Pachitariu, L Luo, ...
Science 364 (6437), eaav3932, 2019
Vision and locomotion shape the interactions between neuron types in mouse visual cortex
M Dipoppa, A Ranson, M Krumin, M Pachitariu, M Carandini, KD Harris
Neuron 98 (3), 602-615. e8, 2018
Toroidal topology of population activity in grid cells
RJ Gardner, E Hermansen, M Pachitariu, Y Burak, NA Baas, BA Dunn, ...
Nature 602 (7895), 123-128, 2022
Cellpose 2.0: how to train your own model
M Pachitariu, C Stringer
Nature methods 19 (12), 1634-1641, 2022
Robustness of spike deconvolution for neuronal calcium imaging
M Pachitariu, C Stringer, KD Harris
Journal of Neuroscience 38 (37), 7976-7985, 2018
State-dependent population coding in primary auditory cortex
M Pachitariu, DR Lyamzin, M Sahani, NA Lesica
Journal of Neuroscience 35 (5), 2058-2073, 2015
Community-based benchmarking improves spike rate inference from two-photon calcium imaging data
P Berens, J Freeman, T Deneux, N Chenkov, T McColgan, A Speiser, ...
PLoS computational biology 14 (5), e1006157, 2018
High-precision coding in visual cortex
C Stringer, M Michaelos, D Tsyboulski, SE Lindo, M Pachitariu
Cell 184 (10), 2767-2778. e15, 2021
Extracting regions of interest from biological images with convolutional sparse block coding
M Pachitariu, AM Packer, N Pettit, H Dalgleish, M Hausser, M Sahani
Advances in Neural Information Processing Systems, 1745-1753, 2013
Computational processing of neural recordings from calcium imaging data
C Stringer, M Pachitariu
Current opinion in neurobiology 55, 22-31, 2019
Inhibitory control of correlated intrinsic variability in cortical networks
C Stringer, M Pachitariu, NA Steinmetz, M Okun, P Bartho, KD Harris, ...
Elife 5, e19695, 2016
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