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Stefano de Pretis
Stefano de Pretis
San Raffaele Hospital, Center for Omics Sciences, Milan, Italy
Verified email at hsr.it
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Cited by
Cited by
Year
Selective transcriptional regulation by Myc in cellular growth control and lymphomagenesis
A Sabo, TR Kress, M Pelizzola, S De Pretis, MM Gorski, A Tesi, MJ Morelli, ...
Nature 511 (7510), 488-492, 2014
5142014
Degradation dynamics of microRNAs revealed by a novel pulse-chase approach
MJ Marzi, F Ghini, B Cerruti, S De Pretis, P Bonetti, C Giacomelli, ...
Genome research 26 (4), 554-565, 2016
1912016
Integrative classification of human coding and noncoding genes through RNA metabolism profiles
N Mukherjee, L Calviello, A Hirsekorn, S de Pretis, M Pelizzola, U Ohler
Nature structural & molecular biology 24 (1), 86-96, 2017
1712017
Transcription of mammalian cis-regulatory elements is restrained by actively enforced early termination
LMI Austenaa, I Barozzi, M Simonatto, S Masella, G Della Chiara, ...
Molecular cell 60 (3), 460-474, 2015
972015
methylPipe and compEpiTools: a suite of R packages for the integrative analysis of epigenomics data
K Kishore, S de Pretis, R Lister, MJ Morelli, V Bianchi, B Amati, JR Ecker, ...
BMC bioinformatics 16, 1-11, 2015
812015
INSPEcT: a computational tool to infer mRNA synthesis, processing and degradation dynamics from RNA-and 4sU-seq time course experiments
S De Pretis, T Kress, MJ Morelli, GEM Melloni, L Riva, B Amati, ...
Bioinformatics 31 (17), 2829-2835, 2015
692015
Integrated systems for NGS data management and analysis: open issues and available solutions
V Bianchi, A Ceol, AGE Ogier, S De Pretis, E Galeota, K Kishore, P Bora, ...
Frontiers in genetics 7, 188599, 2016
632016
Integrative analysis of RNA polymerase II and transcriptional dynamics upon MYC activation
S de Pretis, TR Kress, MJ Morelli, A Sabò, C Locarno, A Verrecchia, ...
Genome research 27 (10), 1658-1664, 2017
602017
An early Myc‐dependent transcriptional program orchestrates cell growth during B‐cell activation
A Tesi, S de Pretis, M Furlan, M Filipuzzi, MJ Morelli, A Andronache, ...
EMBO reports 20 (9), e47987, 2019
522019
DOTS-Finder: a comprehensive tool for assessing driver genes in cancer genomes
GEM Melloni, AGE Ogier, S de Pretis, L Mazzarella, M Pelizzola, ...
Genome medicine 6, 1-13, 2014
362014
m6A-dependent RNA dynamics in T cell differentiation
M Furlan, E Galeota, S De Pretis, M Caselle, M Pelizzola
Genes 10 (1), 28, 2019
342019
Genome-wide dynamics of RNA synthesis, processing, and degradation without RNA metabolic labeling
M Furlan, E Galeota, N Del Gaudio, E Dassi, M Caselle, S de Pretis, ...
Genome research 30 (10), 1492-1507, 2020
322020
New insight into the catalytic-dependent and-independent roles of METTL3 in sustaining aberrant translation in chronic myeloid leukemia
Z Ianniello, M Sorci, L Ceci Ginistrelli, A Iaiza, M Marchioni, C Tito, ...
Cell Death & Disease 12 (10), 870, 2021
272021
Dynamics of transcriptional and post-transcriptional regulation
M Furlan, S de Pretis, M Pelizzola
Briefings in Bioinformatics 22 (4), bbaa389, 2021
272021
Translation is required for miRNA‐dependent decay of endogenous transcripts
A Biasini, B Abdulkarim, S de Pretis, JY Tan, R Arora, H Wischnewski, ...
The EMBO journal 40 (3), e104569, 2021
242021
LowMACA: exploiting protein family analysis for the identification of rare driver mutations in cancer
GEM Melloni, S de Pretis, L Riva, M Pelizzola, A Céol, J Costanza, ...
BMC bioinformatics 17, 1-12, 2016
222016
Direct RNA sequencing for the study of synthesis, processing, and degradation of modified transcripts
M Furlan, I Tanaka, T Leonardi, S De Pretis, M Pelizzola
Frontiers in Genetics 11, 515044, 2020
102020
Computational and experimental methods to decipher the epigenetic code
S de Pretis, M Pelizzola
Frontiers in Genetics 5, 109754, 2014
92014
Motor neurons use push-pull signals to direct vascular remodeling critical for their connectivity
LF Martins, I Brambilla, A Motta, S de Pretis, GP Bhat, A Badaloni, ...
Neuron 110 (24), 4090-4107. e11, 2022
72022
Selective transcriptional regulation by Myc: Experimental design and computational analysis of high-throughput sequencing data
M Pelizzola, MJ Morelli, A Sabò, TR Kress, S de Pretis, B Amati
Data in brief 3, 40-46, 2015
62015
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