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Hananeh Aliee
Hananeh Aliee
Sanger Institute, Cambridge, UK
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Year
Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics
C Muus, MD Luecken, G Eraslan, L Sikkema, A Waghray, G Heimberg, ...
Nature Medicine, 1-14, 2021
544*2021
Best practices for single-cell analysis across modalities
L Heumos, AC Schaar, C Lance, A Litinetskaya, F Drost, L Zappia, ...
Nature Reviews Genetics, 1-23, 2023
1772023
A sandbox for prediction and integration of DNA, RNA, and proteins in single cells
MD Luecken, DB Burkhardt, R Cannoodt, C Lance, A Agrawal, H Aliee, ...
NeurIPS 2021 Track Datasets and Benchmarks, 2021
642021
AutoGeneS: Automatic gene selection using multi-objective optimization for RNA-seq deconvolution
H Aliee, FJ Theis
Cell Systems 12 (7), 706-715. e4, 2021
642021
A new time-independent reliability importance measure
E Borgonovo, H Aliee, M Glaß, J Teich
European Journal of Operational Research 254 (2), 427-442, 2016
612016
A fast and accurate fault tree analysis based on stochastic logic implemented on field-programmable gate arrays
H Aliee, HR Zarandi
IEEE Transactions on Reliability 62 (1), 13-22, 2013
532013
Origin and function of activated fibroblast states during zebrafish heart regeneration
B Hu, S Lelek, B Spanjaard, H El-Sammak, MG Simões, J Mintcheva, ...
Nature Genetics, 1-11, 2022
442022
Resilience Articulation Point (RAP): Cross-layer dependability modeling for nanometer system-on-chip resilience
A Herkersdorf, H Aliee, M Engel, M Glaß, C Gimmler-Dumont, J Henkel, ...
Microelectronics Reliability 54 (6-7), 1066-1074, 2014
412014
Determinants of expression of SARS‐CoV‐2 entry related genes in upper and lower airways
H Aliee, F Massip, C Qi, MS de Biase, J van Nijnatten, ETG Kersten, ...
Allergy, 2021
31*2021
Fault tree analysis using stochastic logic: A reliable and high speed computing
H Aliee, HR Zarandi
2011 Proceedings-Annual Reliability and Maintainability Symposium, 1-6, 2011
312011
On the Boolean extension of the Birnbaum importance to non-coherent systems
H Aliee, E Borgonovo, M Glaß, J Teich
Reliability Engineering & System Safety 160, 191-200, 2017
292017
Sfaira accelerates data and model reuse in single cell genomics
DS Fischer, L Dony, M König, A Moeed, L Zappia, S Tritschler, ...
Genome Biology, 2020
262020
Integration of single-cell transcriptomes and chromatin landscapes reveals regulatory programs driving pharyngeal organ development
ME Magaletta, M Lobo, EM Kernfeld, H Aliee, JD Huey, TJ Parsons, ...
Nature Communications 13 (1), 1-16, 2022
252022
Automatic success tree-based reliability analysis for the consideration of transient and permanent faults
H Aliee, M Glaß, F Reimann, J Teich
Proceedings of the Conference on Design, Automation and Test in Europe, 1621 …, 2013
192013
Beyond Predictions in Neural ODEs: Identification and Interventions
H Aliee, FJ Theis, N Kilbertus
arXiv preprint arXiv:2106.12430, 2021
132021
Current smoking alters gene expression and DNA methylation in the nasal epithelium of patients with asthma
KD Reddy, A Lan, IM Boudewijn, SNH Rathnayake, GH Koppelman, ...
American Journal of Respiratory Cell and Molecular Biology 65 (4), 366-377, 2021
122021
TDP-43 condensates and lipid droplets regulate the reactivity of microglia and regeneration after traumatic brain injury
A Zambusi, KT Novoselc, S Hutten, S Kalpazidou, C Koupourtidou, ...
Nature Neuroscience, 1-18, 2022
112022
Sparsity in Continuous-Depth Neural Networks
H Aliee, T Richter, M Solonin, I Ibarra, F Theis, N Kilbertus
NeurIPS 2022, 2022
82022
An efficient technique for computing importance measures in automatic design of dependable embedded systems
H Aliee, M Glaß, F Khosravi, J Teich
Proceedings of the 2014 International Conference on Hardware/Software …, 2014
82014
Guiding Genetic Algorithms using importance measures for reliable design of embedded systems
H Aliee, S Vitzethum, M Glaß, J Teich, E Borgonovo
Defect and Fault Tolerance in VLSI and Nanotechnology Systems (DFT), 2016 …, 2016
62016
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