| Hidden complexity of free energy surfaces for peptide (protein) folding SV Krivov, M Karplus Proceedings of the National Academy of Sciences 101 (41), 14766-14770, 2004 | 403 | 2004 |
| Free energy disconnectivity graphs: Application to peptide models SV Krivov, M Karplus The Journal of chemical physics 117 (23), 10894-10903, 2002 | 209 | 2002 |
| Diffusive reaction dynamics on invariant free energy profiles SV Krivov, M Karplus Proceedings of the National Academy of Sciences 105 (37), 13841-13846, 2008 | 131 | 2008 |
| One-dimensional free-energy profiles of complex systems: Progress variables that preserve the barriers SV Krivov, M Karplus The journal of physical chemistry B 110 (25), 12689-12698, 2006 | 128 | 2006 |
| One-dimensional barrier-preserving free-energy projections of a β-sheet miniprotein: New insights into the folding process SV Krivov, S Muff, A Caflisch, M Karplus The Journal of Physical Chemistry B 112 (29), 8701-8714, 2008 | 98 | 2008 |
| The free energy landscape analysis of protein (FIP35) folding dynamics SV Krivov The journal of physical chemistry B 115 (42), 12315-12324, 2011 | 74 | 2011 |
| Calculation of free-energy differences by confinement simulations. Application to peptide conformers M Cecchini, SV Krivov, M Spichty, M Karplus The Journal of Physical Chemistry B 113 (29), 9728-9740, 2009 | 63 | 2009 |
| On reaction coordinate optimality SV Krivov Journal of chemical theory and computation 9 (1), 135-146, 2013 | 60 | 2013 |
| Is protein folding sub-diffusive? SV Krivov PLoS computational biology 6 (9), e1000921, 2010 | 54 | 2010 |
| Importance of metastable states in the free energy landscapes of polypeptide chains S Auer, MA Miller, SV Krivov, CM Dobson, M Karplus, M Vendruscolo Physical review letters 99 (17), 178104, 2007 | 54 | 2007 |
| Optimal reaction coordinates PV Banushkina, SV Krivov Wiley Interdisciplinary Reviews: Computational Molecular Science 6 (6), 748-763, 2016 | 45 | 2016 |
| Potential energy surfaces and conformational transitions in biomolecules: a successive confinement approach applied to a solvated tetrapeptide SV Krivov, SF Chekmarev, M Karplus Physical review letters 88 (3), 038101, 2002 | 43 | 2002 |
| Exploratory search during directed navigation in C. elegans and Drosophila larva M Klein, SV Krivov, AJ Ferrer, L Luo, ADT Samuel, M Karplus Elife 6, e30503, 2017 | 37 | 2017 |
| Protein folding free energy landscape along the committor-the optimal folding coordinate SV Krivov Journal of Chemical Theory and Computation 14 (7), 3418-3427, 2018 | 35 | 2018 |
| Folding time distributions as an approach to protein folding kinetics SF Chekmarev, SV Krivov, M Karplus The Journal of Physical Chemistry B 109 (11), 5312-5330, 2005 | 32 | 2005 |
| Numerical Construction of the pfold (Committor) Reaction Coordinate for a Markov Process SV Krivov The Journal of Physical Chemistry B 115 (39), 11382-11388, 2011 | 30 | 2011 |
| Nonparametric variational optimization of reaction coordinates PV Banushkina, SV Krivov The Journal of chemical physics 143 (18), 2015 | 29 | 2015 |
| Analysis of the free-energy surface of proteins from reversible folding simulations LR Allen, SV Krivov, E Paci PLoS Computational Biology 5 (7), e1000428, 2009 | 26 | 2009 |
| Confinement of the molecular dynamics trajectory to a specified catchment area on the potential surface SF Chekmarev, SV Krivov Chemical physics letters 287 (5-6), 719-724, 1998 | 25 | 1998 |
| Hierarchical global optimization of quasiseparable systems: Application to Lennard-Jones clusters SV Krivov Physical Review E 66 (2), 025701, 2002 | 22 | 2002 |
