Joseph O'Reilly
Joseph O'Reilly
Epidemiologist/Biostatistician, IGMM, University of Edinburgh
Verified email at igmm.ed.ac.uk
Title
Cited by
Cited by
Year
The interrelationships of placental mammals and the limits of phylogenetic inference
JE Tarver, M Dos Reis, S Mirarab, RJ Moran, S Parker, JE O’Reilly, ...
Genome Biology and Evolution 8 (2), 330-344, 2016
1672016
Bayesian methods outperform parsimony but at the expense of precision in the estimation of phylogeny from discrete morphological data
JE O'Reilly, MN Puttick, L Parry, AR Tanner, JE Tarver, J Fleming, ...
Biology letters 12 (4), 20160081, 2016
1512016
Dating tips for divergence-time estimation
JE O’Reilly, M Dos Reis, PCJ Donoghue
Trends in Genetics 31 (11), 637-650, 2015
1092015
Uncertain-tree: discriminating among competing approaches to the phylogenetic analysis of phenotype data
MN Puttick, JE O'Reilly, AR Tanner, JF Fleming, J Clark, L Holloway, ...
Proceedings of the Royal Society B: Biological Sciences 284 (1846), 20162290, 2017
1072017
Risks of and risk factors for COVID-19 disease in people with diabetes: a cohort study of the total population of Scotland
SJ McGurnaghan, A Weir, J Bishop, S Kennedy, LAK Blackbourn, ...
The Lancet Diabetes & Endocrinology 9 (2), 82-93, 2021
84*2021
Probabilistic methods surpass parsimony when assessing clade support in phylogenetic analyses of discrete morphological data
JE O'Reilly, MN Puttick, D Pisani, PCJ Donoghue
Palaeontology 61 (1), 105-118, 2018
522018
Tips and nodes are complementary not competing approaches to the calibration of molecular clocks
JE O'Reilly, PCJ Donoghue
Biology letters 12 (4), 20150975, 2016
432016
Probabilistic methods outperform parsimony in the phylogenetic analysis of data simulated without a probabilistic model
MN Puttick, JE O'Reilly, D Pisani, PCJ Donoghue
Palaeontology 62 (1), 1-17, 2019
322019
Empirical realism of simulated data is more important than the model used to generate it: a reply to Goloboff et al.
JE O'Reilly, MN Puttick, D Pisani, PCJ Donoghue
Palaeontology 61 (4), 631-635, 2018
272018
The efficacy of consensus tree methods for summarizing phylogenetic relationships from a posterior sample of trees estimated from morphological data
JE O’Reilly, PCJ Donoghue
Systematic biology 67 (2), 354-362, 2018
222018
Parsimony and maximum-likelihood phylogenetic analyses of morphology do not generally integrate uncertainty in inferring evolutionary history: a response to Brown et al.
MN Puttick, JE O'Reilly, D Oakley, AR Tanner, JF Fleming, J Clark, ...
Proceedings of the Royal Society B: Biological Sciences 284 (1864), 20171636, 2017
172017
FossilSim: An r package for simulating fossil occurrence data under mechanistic models of preservation and recovery
J Barido‐Sottani, W Pett, JE O’Reilly, RCM Warnock
Methods in Ecology and Evolution 10 (6), 835-840, 2019
152019
Disparities in the analysis of morphological disparity
T Guillerme, N Cooper, SL Brusatte, KE Davis, AL Jackson, S Gerber, ...
Biology letters 16 (7), 20200199, 2020
112020
The effect of fossil sampling on the estimation of divergence times with the fossilized birth–death process
JE O’Reilly, PCJ Donoghue
Systematic biology 69 (1), 124-138, 2020
102020
The impact of fossil stratigraphic ranges on tip‐calibration, and the accuracy and precision of divergence time estimates
HP Püschel, JE O'Reilly, D Pisani, PCJ Donoghue
Palaeontology 63 (1), 67-83, 2020
92020
Time trends in deaths before age 50 years in people with type 1 diabetes: a nationwide analysis from Scotland 2004–2017
JE O’Reilly, LAK Blackbourn, TM Caparrotta, A Jeyam, B Kennon, ...
Diabetologia 63, 1626-1636, 2020
22020
Marked improvements in glycaemic outcomes following insulin pump therapy initiation in people with type 1 diabetes: a nationwide observational study in Scotland
A Jeyam, FW Gibb, JA McKnight, B Kennon, JE O’Reilly, TM Caparrotta, ...
Diabetologia 64 (6), 1320-1331, 2021
12021
Divergence-time estimates for hominins provide insight into encephalization and body mass trends in human evolution
HP Püschel, OC Bertrand, JE O’reilly, R Bobe, TA Püschel
Nature Ecology & Evolution 5 (6), 808-819, 2021
12021
Rising Rates and Widening Socioeconomic Disparities in Diabetic Ketoacidosis in Type 1 Diabetes in Scotland: A Nationwide Retrospective Cohort Observational Study
JE O'Reilly, A Jeyam, TM Caparrotta, J Mellor, A Hohn, PM McKeigue, ...
Diabetes Care, 2021
2021
Empirical distributions of homoplasy in morphological data
JL Murphy, MN Puttick, JE O'Reilly, D Pisani, PCJ Donoghue
Palaeontology 64 (4), 505-518, 2021
2021
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