Analysis of RNA-Seq data using TopHat and Cufflinks S Ghosh, CKK Chan Plant Bioinformatics: Methods and Protocols, 339-361, 2016 | 563 | 2016 |
The pangenome of an agronomically important crop plant Brassica oleracea AA Golicz, PE Bayer, GC Barker, PP Edger, HR Kim, PA Martinez, ... Nature communications 7 (1), 13390, 2016 | 463 | 2016 |
The pangenome of hexaploid bread wheat JD Montenegro, AA Golicz, PE Bayer, B Hurgobin, HT Lee, CKK Chan, ... The Plant Journal 90 (5), 1007-1013, 2017 | 405 | 2017 |
Homoeologous exchange is a major cause of gene presence/absence variation in the amphidiploid Brassica napus B Hurgobin, AA Golicz, PE Bayer, CKK Chan, S Tirnaz, A Dolatabadian, ... Plant biotechnology journal 16 (7), 1265-1274, 2018 | 273 | 2018 |
Assembly and comparison of two closely related Brassica napus genomes PE Bayer, B Hurgobin, AA Golicz, CKK Chan, Y Yuan, HT Lee, M Renton, ... Plant biotechnology journal 15 (12), 1602-1610, 2017 | 177 | 2017 |
Variation in abundance of predicted resistance genes in the Brassica oleracea pangenome PE Bayer, AA Golicz, S Tirnaz, CKK Chan, D Edwards, J Batley Plant Biotechnology Journal 17 (4), 789-800, 2019 | 125 | 2019 |
Binning sequences using very sparse labels within a metagenome CKK Chan, AL Hsu, SK Halgamuge, SL Tang BMC bioinformatics 9, 1-17, 2008 | 124 | 2008 |
Unfolding the secrets of coral–algal symbiosis N Rosic, EYS Ling, CKK Chan, HC Lee, P Kaniewska, D Edwards, ... The ISME journal 9 (4), 844-856, 2015 | 108 | 2015 |
Early transcriptional changes in the reef-building coral Acropora aspera in response to thermal and nutrient stress N Rosic, P Kaniewska, CKK Chan, EYS Ling, D Edwards, S Dove, ... BMC genomics 15, 1-17, 2014 | 93 | 2014 |
The Genome of a Southern Hemisphere Seagrass Species (Zostera muelleri) HT Lee, AA Golicz, PE Bayer, Y Jiao, H Tang, AH Paterson, G Sablok, ... Plant physiology 172 (1), 272-283, 2016 | 88 | 2016 |
Using growing self-organising maps to improve the binning process in environmental whole-genome shotgun sequencing CKK Chan, AL Hsu, SL Tang, SK Halgamuge Journal of Biomedicine and Biotechnology 2008, 2008 | 88 | 2008 |
High-resolution skim genotyping by sequencing reveals the distribution of crossovers and gene conversions in Cicer arietinum and Brassica napus PE Bayer, P Ruperao, AS Mason, J Stiller, CKK Chan, S Hayashi, Y Long, ... Theoretical and Applied Genetics 128, 1039-1047, 2015 | 84 | 2015 |
Transcriptomic changes in coral holobionts provide insights into physiological challenges of future climate and ocean change P Kaniewska, CKK Chan, D Kline, EYS Ling, N Rosic, D Edwards, ... PLoS One 10 (10), e0139223, 2015 | 77 | 2015 |
A chromosomal genomics approach to assess and validate the desi and kabuli draft chickpea genome assemblies P Ruperao, CKK Chan, S Azam, M Karafiátová, S Hayashi, J Čížková, ... Plant biotechnology journal 12 (6), 778-786, 2014 | 73 | 2014 |
Identification and characterization of more than 4 million intervarietal SNP s across the group 7 chromosomes of bread wheat K Lai, MT Lorenc, HC Lee, PJ Berkman, PE Bayer, P Visendi, P Ruperao, ... Plant biotechnology journal 13 (1), 97-104, 2015 | 58 | 2015 |
Genome-wide survey of the seagrass Zostera muelleri suggests modification of the ethylene signalling network AA Golicz, M Schliep, HT Lee, AWD Larkum, R Dolferus, J Batley, ... Journal of experimental botany 66 (5), 1489-1498, 2015 | 51 | 2015 |
Genomic comparison of two independent seagrass lineages reveals habitat-driven convergent evolution HT Lee, AA Golicz, PE Bayer, AA Severn-Ellis, CKK Chan, J Batley, ... Journal of experimental botany 69 (15), 3689-3702, 2018 | 37 | 2018 |
CropSNPdb: a database of SNP array data for Brassica crops and hexaploid bread wheat A Scheben, B Verpaalen, CT Lawley, CKK Chan, PE Bayer, J Batley, ... The Plant Journal 98 (1), 142-152, 2019 | 35 | 2019 |
An efficient approach to BAC based assembly of complex genomes P Visendi, PJ Berkman, S Hayashi, AA Golicz, PE Bayer, P Ruperao, ... Plant Methods 12, 1-9, 2016 | 20 | 2016 |
Alignment-free analysis of whole-genome sequences from Symbiodiniaceae reveals different phylogenetic signals in distinct regions R Lo, KE Dougan, Y Chen, S Shah, D Bhattacharya, CX Chan Frontiers in Plant Science 13, 815714, 2022 | 18 | 2022 |