Sean Davis
Sean Davis
University of Colorado
Verified email at - Homepage
Cited by
Cited by
NCBI GEO: archive for functional genomics data sets—update
T Barrett, SE Wilhite, P Ledoux, C Evangelista, IF Kim, M Tomashevsky, ...
Nucleic acids research 41 (D1), D991-D995, 2012
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
Management Group Liefer Laura A. 51 Wetterstrand Kris A. 51 Good Peter J. 51 ...
nature 447 (7146), 799-816, 2007
Orchestrating high-throughput genomic analysis with Bioconductor
W Huber, VJ Carey, R Gentleman, S Anders, M Carlson, BS Carvalho, ...
Nature methods 12 (2), 115-121, 2015
GEOquery: a bridge between the Gene Expression Omnibus (GEO) and BioConductor
S Davis, PS Meltzer
Bioinformatics 23 (14), 1846-1847, 2007
Rare structural variants disrupt multiple genes in neurodevelopmental pathways in schizophrenia
T Walsh, JM McClellan, SE McCarthy, AM Addington, SB Pierce, ...
Science 320 (5875), 539, 2008
BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis
S Durinck, Y Moreau, A Kasprzyk, S Davis, B De Moor, A Brazma, ...
Bioinformatics 21 (16), 3439-3440, 2005
High-resolution mapping and characterization of open chromatin across the genome
AP Boyle, S Davis, HP Shulha, P Meltzer, EH Margulies, Z Weng, ...
Cell 132 (2), 311-322, 2008
A single IGF1 allele is a major determinant of small size in dogs
NB Sutter, CD Bustamante, K Chase, MM Gray, K Zhao, L Zhu, ...
Science 316 (5821), 112-115, 2007
Pan-cancer genome and transcriptome analyses of 1,699 paediatric leukaemias and solid tumours
X Ma, YU Liu, Y Liu, LB Alexandrov, MN Edmonson, C Gawad, X Zhou, ...
Nature 555 (7696), 371-376, 2018
Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS)
GE Crawford, IE Holt, J Whittle, BD Webb, D Tai, S Davis, EH Margulies, ...
Genome research 16 (1), 123-131, 2006
Exome sequencing identifies GRIN2A as frequently mutated in melanoma
X Wei, V Walia, JC Lin, JK Teer, TD Prickett, J Gartner, S Davis, ...
Nature genetics 43 (5), 442-446, 2011
RCircos: an R package for Circos 2D track plots
H Zhang, P Meltzer, S Davis
BMC bioinformatics 14, 1-5, 2013
Gene expression profiling of human sarcomas: insights into sarcoma biology
K Baird, S Davis, CR Antonescu, UL Harper, RL Walker, Y Chen, ...
Cancer research 65 (20), 9226-9235, 2005
Super-enhancers delineate disease-associated regulatory nodes in T cells
G Vahedi, Y Kanno, Y Furumoto, K Jiang, SCJ Parker, MR Erdos, ...
Nature 520 (7548), 558-562, 2015
Interaction of the glucocorticoid receptor with the chromatin landscape
S John, PJ Sabo, TA Johnson, MH Sung, SC Biddie, SL Lightman, ...
Molecular cell 29 (5), 611-624, 2008
The exomes of the NCI-60 panel: a genomic resource for cancer biology and systems pharmacology
OD Abaan, EC Polley, SR Davis, YJ Zhu, S Bilke, RL Walker, M Pineda, ...
Cancer research 73 (14), 4372-4382, 2013
Interferon-γ links ultraviolet radiation to melanomagenesis in mice
MR Zaidi, S Davis, FP Noonan, C Graff-Cherry, TS Hawley, RL Walker, ...
Nature 469 (7331), 548-553, 2011
Epigenomic alterations and gene expression profiles in respiratory epithelia exposed to cigarette smoke condensate
F Liu, JK Killian, M Yang, RL Walker, JA Hong, M Zhang, S Davis, ...
Oncogene 29 (25), 3650-3664, 2010
DNase-chip: a high-resolution method to identify DNase I hypersensitive sites using tiled microarrays
GE Crawford, S Davis, PC Scacheri, G Renaud, MJ Halawi, MR Erdos, ...
Nature methods 3 (7), 503-509, 2006
Canine tumor cross-species genomics uncovers targets linked to osteosarcoma progression
M Paoloni, S Davis, S Lana, S Withrow, L Sangiorgi, P Picci, S Hewitt, ...
BMC genomics 10, 1-13, 2009
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Articles 1–20