Joseph F. Walker
Joseph F. Walker
University of Illinois at Chicago
Verified email at - Homepage
Cited by
Cited by
Phyx: phylogenetic tools for unix
JW Brown, JF Walker, SA Smith
Bioinformatics 33 (12), 1886-1888, 2017
Quartet Sampling distinguishes lack of support from conflicting support in the green plant tree of life
JB Pease, JW Brown, JF Walker, CE Hinchliff, SA Smith
American journal of botany 105 (3), 385-403, 2018
So many genes, so little time: A practical approach to divergence-time estimation in the genomic era
SA Smith, JW Brown, JF Walker
PloS one 13 (5), e0197433, 2018
Comparative analysis of complete chloroplast genome sequence and inversion variation in Lasthenia burkei (Madieae, Asteraceae)
JF Walker, MJ Zanis, NC Emery
American journal of botany 101 (4), 722-729, 2014
Analyzing contentious relationships and outlier genes in phylogenomics
JF Walker, JW Brown, SA Smith
Systematic biology, 2018
Improved transcriptome sampling pinpoints 26 ancient and more recent polyploidy events in Caryophyllales, including two allopolyploidy events
Y Yang, MJ Moore, SF Brockington, J Mikenas, J Olivieri, JF Walker, ...
new phytologist 217 (2), 855-870, 2018
Characterizing gene tree conflict in plastome-inferred phylogenies
JF Walker, N Walker-Hale, OM Vargas, DA Larson, GW Stull
PeerJ 7, e7747, 2019
From cacti to carnivores: Improved phylotranscriptomic sampling and hierarchical homology inference provide further insight into the evolution of Caryophyllales
JF Walker, Y Yang, T Feng, A Timoneda, J Mikenas, V Hutchison, ...
American journal of botany 105 (3), 446-462, 2018
Widespread paleopolyploidy, gene tree conflict, and recalcitrant relationships among the carnivorous Caryophyllales
JF Walker, Y Yang, MJ Moore, J Mikenas, A Timoneda, SF Brockington, ...
American journal of botany 104 (6), 858-867, 2017
Disparity, diversity, and duplications in the Caryophyllales
SA Smith, JW Brown, Y Yang, R Bruenn, CP Drummond, SF Brockington, ...
New Phytologist 217 (2), 836-854, 2018
Sources of inversion variation in the small single copy (SSC) region of chloroplast genomes
JF Walker, RK Jansen, MJ Zanis, NC Emery
Botanical Society of America, 2015
Phylogenetic conflicts, combinability, and deep phylogenomics in plants
SA Smith, N Walker-Hale, JF Walker, JW Brown
Systematic Biology 69 (3), 579-592, 2020
Spalt expression and the development of melanic color patterns in pierid butterflies
AM Stoehr, JF Walker, A Monteiro
EvoDevo 4 (1), 1-11, 2013
Evolution of Portulacineae marked by gene tree conflict and gene family expansion associated with adaptation to harsh environments
N Wang, Y Yang, MJ Moore, SF Brockington, JF Walker, JW Brown, ...
Molecular biology and evolution 36 (1), 112-126, 2019
Py PHLAWD: A python tool for phylogenetic dataset construction
SA Smith, JF Walker
Methods in Ecology and Evolution 10 (1), 104-108, 2019
An efficient field and laboratory workflow for plant phylotranscriptomic projects
Y Yang, MJ Moore, SF Brockington, A Timoneda, T Feng, HE Marx, ...
Applications in Plant Sciences 5 (3), 1600128, 2017
A consensus phylogenomic approach highlights paleopolyploid and rapid radiation in the history of Ericales
DA Larson, JF Walker, OM Vargas, SA Smith
American journal of botany 107 (5), 773-789, 2020
Grow Where You Thrive, or Where Only You Can Survive? An Analysis of Performance Curve Evolution in a Clade with Diverse Habitat Affinities
SB Tittes, JF Walker, L Torres-Martínez, NC Emery
The American Naturalist 193 (4), 530-544, 2019
Intragenic Conflict in Phylogenomic Data Sets
SA Smith, N Walker-Hale, JF Walker
Molecular Biology and Evolution 37 (11), 3380-3388, 2020
Disentangling biological and analytical factors that give rise to outlier genes in phylogenomic matrices
JF Walker, XX Shen, A Rokas, SA Smith, E Moyroud
bioRxiv, 2020
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