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Matthew D. Clark
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Year
Tools for pathogen genetic surveillance: Lessons from the ash dieback invasion of Europe
JA Peers, RM Leggett, MD Clark, M McMullan
Plos Pathogens 20 (5), e1012182, 2024
2024
Genomics‐informed captive breeding can reduce inbreeding depression and the genetic load in zoo populations
SA Speak, T Birley, C Bortoluzzi, MD Clark, L Percival‐Alwyn, HE Morales, ...
Molecular Ecology Resources, e13967, 2023
42023
A snakemake toolkit for the batch assembly, annotation, and phylogenetic analysis of mitochondrial genomes and ribosomal genes from genome skims of museum collections
O White, A Hall, BW Price, ST Williams, M Clark
bioRxiv, 2023.08. 11.552985, 2023
2023
Exome capture of Antarctic krill (Euphausia superba) for cost effective population genetics of historical collections
O White, G Tarling, L Hughes, S Walkington, MD Clark
bioRxiv, 2023.07. 24.550387, 2023
2023
Air-seq: Measuring air metagenomic diversity in an agricultural ecosystem
M Giolai, W Verweij, N Pearson, P Nicholson, RM Leggett, MD Clark
bioRxiv, 2022.12. 13.520298, 2022
62022
Genomic erosion in a demographically recovered bird species during conservation rescue
HA Jackson, L Percival‐Alwyn, C Ryan, MF Albeshr, L Venturi, ...
Conservation Biology 36 (4), e13918, 2022
212022
Nanopore adaptive sampling: a tool for enrichment of low abundance species in metagenomic samples
S Martin, D Heavens, Y Lan, S Horsfield, MD Clark, RM Leggett
Genome biology 23 (1), 11, 2022
1172022
How low can you go? Driving down the DNA input requirements for nanopore sequencing
D Heavens, D Chooneea, M Giolai, P Cuber, P Aanstad, S Martin, ...
BioRxiv, 2021.10. 15.464554, 2021
122021
Analysis of wild plant pathogen populations reveals a signal of adaptation in genes evolving for survival in agriculture in the beet rust pathogen (Uromyces beticola)
M McMullan, L Percival-Alwyn, K Sawford, G Kaithakottil, M Grey, ...
bioRxiv, 2021.08. 12.456076, 2021
22021
Multiple wheat genomes reveal global variation in modern breeding
S Walkowiak, L Gao, C Monat, G Haberer, MT Kassa, J Brinton, ...
Nature 588 (7837), 277-283, 2020
6422020
Multi-parent populations in crops: a toolbox integrating genomics and genetic mapping with breeding
MF Scott, O Ladejobi, S Amer, AR Bentley, J Biernaskie, SA Boden, ...
Heredity 125 (6), 396-416, 2020
1802020
A low‐cost pipeline for soil microbiome profiling
A Bollmann‐Giolai, M Giolai, D Heavens, I Macaulay, J Malone, MD Clark
Microbiologyopen 9 (12), e1133, 2020
172020
New approaches for metagenome assembly with short reads
M Ayling, MD Clark, RM Leggett
Briefings in bioinformatics 21 (2), 584-594, 2020
1942020
Rapid MinION profiling of preterm microbiota and antimicrobial-resistant pathogens
RM Leggett, C Alcon-Giner, D Heavens, S Caim, TC Brook, M Kujawska, ...
Nature microbiology 5 (3), 430-442, 2020
163*2020
Spatially resolved transcriptomics reveals plant host responses to pathogens
M Giolai, W Verweij, A Lister, D Heavens, I Macaulay, MD Clark
Plant Methods 15, 1-13, 2019
292019
Semi‐quantitative characterisation of mixed pollen samples using MinION sequencing and Reverse Metagenomics (RevMet)
N Peel, LV Dicks, MD Clark, D Heavens, L Percival‐Alwyn, C Cooper, ...
Methods in Ecology and Evolution 10 (10), 1690-1701, 2019
372019
A critical comparison of technologies for a plant genome sequencing project
P Paajanen, G Kettleborough, E López-Girona, M Giolai, D Heavens, ...
Gigascience 8 (3), giy163, 2019
532019
Haplotype Resolving the Genome of Fragaria x Ananassa Using the Basic Sequence Graph Framework
RJ Harrison, GAA Garcia, L Yanes, H Bates, A Armitage, M Clark, ...
Plant and Animal Genome XXVII Conference (January 12-16, 2019), 2019
2019
Der Zebrafisch als in vivo-Modellsystem für Adipositas und assoziierte Erkrankungen
K Landgraf, W Kiess, A Körner
Adipositas-Ursachen, Folgeerkrankungen, Therapie 12 (04), 198-203, 2018
2018
Shifting the limits in wheat research and breeding using a fully annotated reference genome
International Wheat Genome Sequencing Consortium (IWGSC), R Appels, ...
Science 361 (6403), eaar7191, 2018
24562018
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Articles 1–20