| Integrative imaging reveals SARS-CoV-2-induced reshaping of subcellular morphologies M Cortese, JY Lee, B Cerikan, CJ Neufeldt, VMJ Oorschot, S Köhrer, ... Cell host & microbe 28 (6), 853-866. e5, 2020 | 319 | 2020 |
| Accurate and versatile 3D segmentation of plant tissues at cellular resolution A Wolny, L Cerrone, A Vijayan, R Tofanelli, AV Barro, M Louveaux, ... Elife 9, e57613, 2020 | 246 | 2020 |
| Profiling cellular diversity in sponges informs animal cell type and nervous system evolution JM Musser, KJ Schippers, M Nickel, G Mizzon, AB Kohn, C Pape, ... Science 374 (6568), 717-723, 2021 | 201 | 2021 |
| Multicut brings automated neurite segmentation closer to human performance T Beier, C Pape, N Rahaman, T Prange, S Berg, DD Bock, A Cardona, ... Nature Methods 14 (2), 101, 2017 | 180 | 2017 |
| Prevalence of SARS-CoV-2 infection in children and their parents in Southwest Germany B Tönshoff, B Müller, R Elling, H Renk, P Meissner, H Hengel, ... JAMA pediatrics 175 (6), 586-593, 2021 | 165 | 2021 |
| Volume electron microscopy CJ Peddie, C Genoud, A Kreshuk, K Meechan, KD Micheva, K Narayan, ... Nature Reviews Methods Primers 2 (1), 51, 2022 | 159 | 2022 |
| OME-NGFF: a next-generation file format for expanding bioimaging data-access strategies J Moore, C Allan, S Besson, JM Burel, E Diel, D Gault, K Kozlowski, ... Nature methods 18 (12), 1496-1498, 2021 | 149* | 2021 |
| Whole-body integration of gene expression and single-cell morphology HM Vergara, C Pape, KI Meechan, V Zinchenko, C Genoud, AA Wanner, ... Cell 184 (18), 4819-4837. e22, 2021 | 98 | 2021 |
| Synaptic Cleft Segmentation in Non-isotropic Volume Electron Microscopy of the Complete Drosophila Brain L Heinrich, J Funke, C Pape, J Nunez-Iglesias, S Saalfeld Medical Image Computing and Computer Assisted Intervention–MICCAI 2018: 21st …, 2018 | 98 | 2018 |
| Convolutional networks for supervised mining of molecular patterns within cellular context I de Teresa-Trueba, SK Goetz, A Mattausch, F Stojanovska, CE Zimmerli, ... Nature Methods 20 (2), 284-294, 2023 | 96 | 2023 |
| The mutex watershed: efficient, parameter-free image partitioning S Wolf, C Pape, A Bailoni, N Rahaman, A Kreshuk, U Kothe, ... Proceedings of the European Conference on Computer Vision (ECCV), 546-562, 2018 | 95 | 2018 |
| OME-Zarr: a cloud-optimized bioimaging file format with international community support J Moore, D Basurto-Lozada, S Besson, J Bogovic, J Bragantini, EM Brown, ... Histochemistry and Cell Biology 160 (3), 223-251, 2023 | 75 | 2023 |
| Bioimage model zoo: a community-driven resource for accessible deep learning in bioimage analysis W Ouyang, F Beuttenmueller, E Gómez-de-Mariscal, C Pape, T Burke, ... BioRxiv, 2022.06. 07.495102, 2022 | 71 | 2022 |
| napari: a multi-dimensional image viewer for Python J Ahlers, DA Moré, O Amsalem, A Anderson, G Bokota, P Boone, ... Zenodo, 1-2, 2023 | 61 | 2023 |
| Segment anything for microscopy A Archit, L Freckmann, S Nair, N Khalid, P Hilt, V Rajashekar, M Freitag, ... Nature Methods, 1-13, 2025 | 57* | 2025 |
| Gasp, a generalized framework for agglomerative clustering of signed graphs and its application to instance segmentation A Bailoni, C Pape, N Hütsch, S Wolf, T Beier, A Kreshuk, FA Hamprecht Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern …, 2022 | 39* | 2022 |
| Biomedical image analysis competitions: The state of current participation practice M Eisenmann, A Reinke, V Weru, MD Tizabi, F Isensee, TJ Adler, ... arXiv preprint arXiv:2212.08568, 2022 | 37 | 2022 |
| Solving large multicut problems for connectomics via domain decomposition C Pape, T Beier, P Li, V Jain, DD Bock, A Kreshuk Proceedings of the IEEE International conference on computer vision …, 2017 | 37 | 2017 |
| A versatile reporter system to monitor virus-infected cells and its application to dengue virus and SARS-CoV-2 F Pahmeier, CJ Neufeldt, B Cerikan, V Prasad, C Pape, V Laketa, ... Journal of virology 95 (4), 10.1128/jvi. 01715-20, 2021 | 33 | 2021 |
| Microscopy‐based assay for semi‐quantitative detection of SARS‐CoV‐2 specific antibodies in human sera: A semi‐quantitative, high throughput, microscopy‐based assay expands … C Pape, R Remme, A Wolny, S Olberg, S Wolf, L Cerrone, M Cortese, ... Bioessays 43 (3), 2000257, 2021 | 29 | 2021 |
Anna KreshukGroup Leader, EMBL HeidelbergVerified email at embl.de
