Simon Coakley
TitleCited byYear
High performance cellular level agent-based simulation with FLAME for the GPU
P Richmond, D Walker, S Coakley, D Romano
Briefings in bioinformatics 11 (3), 334-347, 2010
1632010
Exploitation of high performance computing in the FLAME agent-based simulation framework
S Coakley, M Gheorghe, M Holcombe, S Chin, D Worth, C Greenough
2012 IEEE 14th International Conference on High Performance Computing and …, 2012
952012
A high performance agent based modelling framework on graphics card hardware with CUDA
P Richmond, S Coakley, DM Romano
Proceedings of The 8th International Conference on Autonomous Agents and …, 2009
792009
Modelling complex biological systems using an agent-based approach
M Holcombe, S Adra, M Bicak, S Chin, S Coakley, AI Graham, J Green, ...
Integrative Biology 4 (1), 53-64, 2011
642011
An integrated systems biology approach to understanding the rules of keratinocyte colony formation
T Sun, P McMinn, S Coakley, M Holcombe, R Smallwood, S MacNeil
Journal of the Royal Society Interface 4 (17), 1077-1092, 2007
602007
A general framework for agent-based modelling of complex systems
M Holcombe, S Coakley, R Smallwood
Proceedings of the 2006 European conference on complex systems 1, 2006
472006
From molecules to insect communities-How formal agent based computational modelling is uncovering new biological facts
S Coakley, R Smallwood, M Holcombe
Scientiae Mathematicae Japonicae 64 (2), 185-198, 2006
362006
Using x-machines as a formal basis for describing agents in agent-based modelling
S Coakley, R Smallwood, M Holcombe
Simulation Series 38 (2), 33, 2006
352006
Cellular level agent based modelling on the graphics processing unit
P Richmond, S Coakley, D Romano
2009 international workshop on high performance computational systems …, 2009
312009
Large-scale modeling of economic systems
M Holcombe, S Coakley, M Kiran, S Chin, C Greenough, D Worth, ...
Complex Systems Publications, 2013
252013
Formal software architecture for agent-based modelling in biology
ST Coakley
University of Sheffield, 2007
252007
Validation and discovery from computational biology models
M Kiran, S Coakley, N Walkinshaw, P McMinn, M Holcombe
Biosystems 93 (1-2), 141-150, 2008
212008
Agent-based modeling of oxygen-responsive transcription factors in Escherichia coli
H Bai, MD Rolfe, W Jia, S Coakley, RK Poole, J Green, M Holcombe
Plos computational biology 10 (4), e1003595, 2014
122014
Large-scale simulations with FLAME
S Coakley, P Richmond, M Gheorghe, S Chin, D Worth, M Holcombe, ...
Intelligent Agents in Data-intensive Computing, 123-142, 2016
102016
Flame: An approach to the parallelisation of agent-based applications
AL Chin, AD Worth, AC Greenough, S Coakley, M Holcombe, M Kiran
Work 501, 63259, 2012
102012
An Agent-Based software platform for modelling systems biology
SF Adra, S Coakley, M Kiran, P McMinn
University of Sheffield Epitheliome Project: Technical Report: University of …, 2008
92008
Flame-ii: a redesign of the flexible large-scale agent-based modelling environment
LS Chin, DJ Worth, C Greenough, S Coakley, M Holcombe, M Gheorghe
Rutherford Appleton Laboratory Technical Reports, 2012
72012
The exploitation of parallel high performance systems in the FLAME agent-based simulation framework
C Greenough, D Worth, S Chin, M Holcombe, S Coakley
RAL Technical Reports RAL-TR-2008-022, 2008
32008
Individual cell-based simulation of 3D multicellular spheroid self-assembly
JJ Zhu, S Coakley, M Holcombe, S MacNeil, RH Smallwood
Eur Cells Mater 11 (Suppl 3), 31, 2006
32006
Modelling and analysis of E. coli respiratory chain
A Ţurcanu, L Mierlă, F Ipate, A Stefanescu, H Bai, M Holcombe, S Coakley
Applications of Membrane Computing in Systems and Synthetic Biology, 247-266, 2014
22014
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Articles 1–20