Nikolaos Alachiotis
Nikolaos Alachiotis
Postdoctoral research fellow, CARV, Foundation for Research and Technology - Hellas (FORTH-ICS)
Verified email at ics.forth.gr
TitleCited byYear
SweeD: Likelihood-based detection of selective sweeps in thousands of genomes
P Pavlidis, D Živković, A Stamatakis, N Alachiotis
Molecular Biology and Evolution, 2013
1422013
Time and memory efficient likelihood-based tree searches on phylogenomic alignments with missing data
A Stamatakis, N Alachiotis
Bioinformatics 26 (12), i132-i139, 2010
1002010
Efficient PC-FPGA Communication over Gigabit Ethernet
N Alachiotis, SA Berger, A Stamatakis
Computer and Information Technology (CIT), 2010 IEEE 10th International …, 2010
842010
3D-Stacked Memory-Side Acceleration: Accelerator and System Design
Q Guo, N Alachiotis, B Akin, F Sadi, G Xu, TM Low, L Pileggi, JC Hoe, ...
2nd Workshop on Near Data Processing (WONDP) in conjunction with the 47th …, 2014
722014
OmegaPlus: a scalable tool for rapid detection of selective sweeps in whole-genome datasets
N Alachiotis, A Stamatakis, P Pavlidis
Bioinformatics 28 (17), 2274-2275, 2012
652012
Exploring FPGAs for accelerating the phylogenetic likelihood function
N Alachiotis, E Sotiriades, A Dollas, A Stamatakis
2009 IEEE International Symposium on Parallel & Distributed Processing, 1-8, 2009
432009
Archaic Hominin Introgression in Africa Contributes to Functional Salivary MUC7 Genetic Variation
D Xu, P Pavlidis, RO Taskent, N Alachiotis, C Flanagan, M DeGiorgio, ...
Molecular Biology and Evolution 34 (10), 2704-2715, 2017
272017
A survey of methods and tools to detect recent and strong positive selection
P Pavlidis, N Alachiotis
Journal of Biological Research-Thessaloniki 24 (1), 7, 2017
242017
A reconfigurable architecture for the phylogenetic likelihood function
N Alachiotis, A Stamatakis, E Sotiriades, A Dollas
Field Programmable Logic and Applications, 2009. FPL 2009. International …, 2009
232009
A versatile UDP/IP based PC↔ FPGA communication platform
N Alachiotis, SA Berger, A Stamatakis
2012 International Conference on Reconfigurable Computing and FPGAs, 1-6, 2012
222012
Efficient floating-point logarithm unit for FPGAs
N Alachiotis, A Stamatakis
2010 IEEE International Symposium on Parallel & Distributed Processing …, 2010
212010
FPGA acceleration of the phylogenetic parsimony kernel?
N Alachiotis, A Stamatakis
2011 21st International Conference on Field Programmable Logic and …, 2011
192011
Coupling SIMD and SIMT Architectures to Boost Performance of a Phylogeny-aware Alignment Kernel
N Alachiotis, SA Berger, A Stamatakis
BMC Bioinformatics, 2012
172012
Accelerating phylogeny-aware short DNA read alignment with FPGAs
N Alachiotis, SA Berger, A Stamatakis
2011 IEEE 19th Annual International Symposium on Field-Programmable Custom …, 2011
132011
A generic vectorization scheme and a gpu kernel for the phylogenetic likelihood library
F Izquierdo-Carrasco, N Alachiotis, S Berger, T Flouri, SP Pissis, ...
2013 IEEE International Symposium on Parallel & Distributed Processing …, 2013
102013
Exploiting multi-grain parallelism for efficient selective sweep detection
N Alachiotis, P Pavlidis, A Stamatakis
International Conference on Algorithms and Architectures for Parallel …, 2012
102012
RAiSD detects positive selection based on multiple signatures of a selective sweep and SNP vectors
N Alachiotis, P Pavlidis
Communications Biology 1 (1), 79, 2018
92018
Scalable linkage-disequilibrium-based selective sweep detection: a performance guide
N Alachiotis, P Pavlidis
GigaScience 5 (1), 7, 2016
82016
An optimized reconfigurable system for computing the phylogenetic likelihood function on dna data
SA Berger, N Alachiotis, A Stamatakis
2012 IEEE 26th International Parallel and Distributed Processing Symposium …, 2012
8*2012
FPGA optimizations for a pipelined floating-point exponential unit
N Alachiotis, A Stamatakis
International Symposium on Applied Reconfigurable Computing, 316-327, 2011
82011
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Articles 1–20