Tobias Wittkop
Tobias Wittkop
Staff Bioinformatics Scientist at Adaptive Biotechnologies
Verified email at wittkop.com
Title
Cited by
Cited by
Year
A large-scale evaluation of computational protein function prediction
P Radivojac, WT Clark, TR Oron, AM Schnoes, T Wittkop, A Sokolov, ...
Nature methods 10 (3), 221-227, 2013
7482013
clusterMaker: a multi-algorithm clustering plugin for Cytoscape
JH Morris, L Apeltsin, AM Newman, J Baumbach, T Wittkop, G Su, ...
BMC bioinformatics 12 (1), 436, 2011
3612011
Genetic correction of Huntington's disease phenotypes in induced pluripotent stem cells
MC An, N Zhang, G Scott, D Montoro, T Wittkop, S Mooney, S Melov, ...
Cell stem cell 11 (2), 253-263, 2012
3342012
Partitioning biological data with transitivity clustering
T Wittkop, D Emig, S Lange, S Rahmann, M Albrecht, JH Morris, S Böcker, ...
Nature methods 7 (6), 419-420, 2010
1202010
Large scale clustering of protein sequences with FORCE-A layout based heuristic for weighted cluster editing
T Wittkop, J Baumbach, FP Lobo, S Rahmann
BMC bioinformatics 8 (1), 1-12, 2007
872007
Exact and heuristic algorithms for weighted cluster editing
S Rahmann, T Wittkop, J Baumbach, M Martin, A Truss, S Böcker
Computational Systems Bioinformatics: (Volume 6), 391-401, 2007
752007
Comprehensive cluster analysis with Transitivity Clustering
T Wittkop, D Emig, A Truss, M Albrecht, S Böcker, J Baumbach
Nature protocols 6 (3), 285-295, 2011
642011
Integrated analysis and reconstruction of microbial transcriptional gene regulatory networks using CoryneRegNet
J Baumbach, T Wittkop, CK Kleindt, A Tauch
Nature Protocols 4 (6), 992, 2009
482009
CoryneRegNet 3.0—an interactive systems biology platform for the analysis of gene regulatory networks in corynebacteria and Escherichia coli
J Baumbach, T Wittkop, K Rademacher, S Rahmann, K Brinkrolf, A Tauch
Journal of biotechnology 129 (2), 279-289, 2007
352007
CoryneRegNet 2: an integrative bioinformatics approach for reconstruction and comparison of transcriptional regulatory networks in prokaryotes
J Baumbach, K Brinkrolf, T Wittkop, A Tauch, S Rahmann
Journal of Integrative Bioinformatics 3 (2), 1-13, 2006
20*2006
Density parameter estimation for finding clusters of homologous proteins—tracing actinobacterial pathogenicity lifestyles
R Röttger, P Kalaghatgi, P Sun, SC Soares, V Azevedo, T Wittkop, ...
Bioinformatics 29 (2), 215-222, 2013
192013
STOP using just GO: a multi-ontology hypothesis generation tool for high throughput experimentation
T Wittkop, E TerAvest, US Evani, KM Fleisch, AE Berman, C Powell, ...
BMC bioinformatics 14 (1), 53, 2013
162013
CoryneRegNet 2: an integrative bioinformatics approach for reconstruction and comparison of transcriptional regulatory networks in prokaryotes
J Baumbach, K Brinkrolf, T Wittkop, A Tauch, S Rahmann
Journal of Integrative Bioinformatics 3 (2), 1-13, 2006
162006
Extension and robustness of transitivity clustering for protein–protein interaction network analysis
T Wittkop, S Rahmann, R Röttger, S Böcker, J Baumbach
Internet Mathematics 7 (4), 255-273, 2011
142011
Online transitivity clustering of biological data with missing values
R Röttger, C Kreutzer, TD Vu, T Wittkop, J Baumbach
German Conference on Bioinformatics 2012, 2012
52012
Efficient online transcription factor binding site adjustment by integrating transitive graph projection with MoRAine 2.0
T Wittkop, S Rahmann, J Baumbach
Journal of integrative bioinformatics 7 (3), 28-38, 2010
52010
DEFOG: discrete enrichment of functionally organized genes
T Wittkop, AE Berman, KM Fleisch, SD Mooney
Integrative Biology 4 (7), 795-804, 2012
32012
Transitivity Clustering: Clustering biological data by unraveling hidden transitive substructures
T Wittkop
Suedwestdeutscher Verlag fuer Hochschulschriften, 2010
22010
DIE MULTIPLIKATIVE QUADRATISCHE NORM FUR DEN GROTHENDIECK-WITT-RING
T Wittkop
Diplomarbeit, Universität Bielefeld, 2006
22006
Genome and proteome annotation using automatically recognized concepts and functional networks.
A Bivol, T Wittkop, D Davis, SD Mooney
AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits …, 2013
2013
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Articles 1–20