Casey Bergman
Casey Bergman
Associate Professor, Institute of Bioinformatics, University of Georgia
Verified email at uga.edu - Homepage
Title
Cited by
Cited by
Year
Evolution of genes and genomes on the Drosophila phylogeny
Drosophila 12 Genomes Consortium
Nature 450 (7167), 203, 2007
18592007
Population genomics of domestic and wild yeasts
G Liti, DM Carter, AM Moses, J Warringer, L Parts, SA James, RP Davey, ...
Nature 458 (7236), 337-341, 2009
12902009
The Drosophila melanogaster Genetic Reference Panel
TF Mackay, S Richards, EA Stone, A Barbadilla, JF Ayroles, D Zhu, ...
Nature 482, 173-178, 2012
11442012
Evidence for stabilizing selection in a eukaryotic enhancer element
MZ Ludwig, C Bergman, NH Patel, M Kreitman
Nature 403 (6769), 564-567, 2000
5892000
The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective
JS Kaminker, CM Bergman, B Kronmiller, J Carlson, R Svirskas, S Patel, ...
Genome biology 3 (12), research0084. 1, 2002
5442002
Gene expression divergence recapitulates the developmental hourglass model
AT Kalinka, KM Varga, DT Gerrard, S Preibisch, DL Corcoran, J Jarrells, ...
Nature 468 (7325), 811-814, 2010
3412010
Combined evidence annotation of transposable elements in genome sequences
H Quesneville, CM Bergman, O Andrieu, D Autard, D Nouaud, ...
PLoS computational biology 1 (2), 2005
3062005
ORegAnno: an open-access community-driven resource for regulatory annotation
OL Griffith, SB Montgomery, B Bernier, B Chu, K Kasaian, S Aerts, ...
Nucleic acids research 36 (suppl_1), D107-D113, 2007
2642007
LINNAEUS: a species name identification system for biomedical literature
M Gerner, G Nenadic, CM Bergman
BMC bioinformatics 11 (1), 85, 2010
2292010
Functional evolution of a cis-regulatory module
MZ Ludwig, A Palsson, E Alekseeva, CM Bergman, J Nathan, M Kreitman
PLoS biology 3 (4), 2005
2212005
Drosophila DNase I footprint database: a systematic genome annotation of transcription factor binding sites in the fruitfly, Drosophila melanogaster
CM Bergman, JW Carlson, SE Celniker
Bioinformatics 21 (8), 1747-1749, 2005
2102005
Analysis of conserved noncoding DNA in Drosophila reveals similar constraints in intergenic and intronic sequences
CM Bergman, M Kreitman
Genome Research 11 (8), 1335-1345, 2001
1942001
REDfly v3.0: toward a comprehensive database of transcriptional regulatory elements in Drosophila
SM Gallo, DT Gerrard, D Miner, M Simich, B Des Soye, CM Bergman, ...
Nucleic acids research 39 (suppl_1), D118-D123, 2010
1882010
Discovering and detecting transposable elements in genome sequences
CM Bergman, H Quesneville
Briefings in bioinformatics 8 (6), 382-392, 2007
1872007
Principles of genome evolution in the Drosophila melanogaster species group
JM Ranz, D Maurin, YS Chan, M Von Grotthuss, LDW Hillier, J Roote, ...
PLoS biology 5 (6), 2007
1672007
Assessing the impact of comparative genomic sequence data on the functional annotation of the Drosophila genome
CM Bergman, BD Pfeiffer, DE Rincón-Limas, RA Hoskins, A Gnirke, ...
Genome Biology 3 (12), 1-0086.20, 2002
1592002
Recurrent insertion and duplication generate networks of transposable element sequences in the Drosophila melanogaster genome
CM Bergman, H Quesneville, D Anxolabéhère, M Ashburner
Genome biology 7 (11), R112, 2006
1542006
Benchmarking tools for the alignment of functional noncoding DNA
DA Pollard, CM Bergman, J Stoye, SE Celniker, MB Eisen
BMC bioinformatics 5 (1), 6, 2004
1542004
ORegAnno: an open access database and curation system for literature-derived promoters, transcription factor binding sites and regulatory variation
SB Montgomery, OL Griffith, MC Sleumer, CM Bergman, M Bilenky, ...
Bioinformatics 22 (5), 637-640, 2006
1382006
Population genomics of the Wolbachia endosymbiont in Drosophila melanogaster
MF Richardson, LA Weinert, JJ Welch, RS Linheiro, MM Magwire, ...
PLoS Genet 8 (12), e1003129, 2012
1322012
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