Casey Bergman
Casey Bergman
Associate Professor, Institute of Bioinformatics, University of Georgia
Verified email at uga.edu - Homepage
TitleCited byYear
Evolution of genes and genomes on the Drosophila phylogeny
Drosophila 12 Genomes Consortium
Nature 450 (7167), 203, 2007
17062007
Population genomics of domestic and wild yeasts
G Liti, DM Carter, AM Moses, J Warringer, L Parts, SA James, RP Davey, ...
Nature 458 (7236), 337, 2009
11252009
The Drosophila melanogaster Genetic Reference Panel
TF Mackay, S Richards, EA Stone, A Barbadilla, JF Ayroles, D Zhu, ...
Nature 482, 173-178, 2012
9062012
Evidence for stabilizing selection in a eukaryotic enhancer element
MZ Ludwig, C Bergman, NH Patel, M Kreitman
Nature 403 (6769), 564, 2000
5572000
The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective
JS Kaminker, CM Bergman, B Kronmiller, J Carlson, R Svirskas, S Patel, ...
Genome biology 3 (12), research0084. 1, 2002
4992002
Gene expression divergence recapitulates the developmental hourglass model
AT Kalinka, KM Varga, DT Gerrard, S Preibisch, DL Corcoran, J Jarrells, ...
Nature 468 (7325), 811, 2010
2902010
Combined evidence annotation of transposable elements in genome sequences
H Quesneville, CM Bergman, O Andrieu, D Autard, D Nouaud, ...
PLoS computational biology 1 (2), e22, 2005
2512005
ORegAnno: an open-access community-driven resource for regulatory annotation
OL Griffith, SB Montgomery, B Bernier, B Chu, K Kasaian, S Aerts, ...
Nucleic acids research 36 (suppl_1), D107-D113, 2007
2352007
Functional evolution of a cis-regulatory module
MZ Ludwig, A Palsson, E Alekseeva, CM Bergman, J Nathan, M Kreitman
PLoS biology 3 (4), e93, 2005
2132005
Drosophila DNase I footprint database: a systematic genome annotation of transcription factor binding sites in the fruitfly, Drosophila melanogaster
CM Bergman, JW Carlson, SE Celniker
Bioinformatics 21 (8), 1747-1749, 2004
2062004
LINNAEUS: a species name identification system for biomedical literature
M Gerner, G Nenadic, CM Bergman
BMC bioinformatics 11 (1), 85, 2010
1992010
Analysis of conserved noncoding DNA in Drosophila reveals similar constraints in intergenic and intronic sequences
CM Bergman, M Kreitman
Genome Research 11 (8), 1335-1345, 2001
1862001
REDfly v3.0: toward a comprehensive database of transcriptional regulatory elements in Drosophila
SM Gallo, DT Gerrard, D Miner, M Simich, B Des Soye, CM Bergman, ...
Nucleic acids research 39 (suppl_1), D118-D123, 2010
1712010
Discovering and detecting transposable elements in genome sequences
CM Bergman, H Quesneville
Briefings in bioinformatics 8 (6), 382-392, 2007
1612007
Principles of genome evolution in the Drosophila melanogaster species group
JM Ranz, D Maurin, YS Chan, M Von Grotthuss, LDW Hillier, J Roote, ...
PLoS biology 5 (6), e152, 2007
1542007
Assessing the impact of comparative genomic sequence data on the functional annotation of the Drosophila genome
CM Bergman, BD Pfeiffer, DE Rincón-Limas, RA Hoskins, A Gnirke, ...
Genome Biology 3 (12), 1-0086.20, 2002
1542002
Benchmarking tools for the alignment of functional noncoding DNA
DA Pollard, CM Bergman, J Stoye, SE Celniker, MB Eisen
BMC bioinformatics 5 (1), 6, 2004
1452004
ORegAnno: an open access database and curation system for literature-derived promoters, transcription factor binding sites and regulatory variation
SB Montgomery, OL Griffith, MC Sleumer, CM Bergman, M Bilenky, ...
Bioinformatics 22 (5), 637-640, 2006
1272006
Recurrent insertion and duplication generate networks of transposable element sequences in the Drosophila melanogaster genome
CM Bergman, H Quesneville, D Anxolabéhère, M Ashburner
Genome biology 7 (11), R112, 2006
1262006
Text mining for biology-the way forward: opinions from leading scientists
RB Altman, CM Bergman, J Blake, C Blaschke, A Cohen, F Gannon, ...
Genome biology 9 (2), S7, 2008
1112008
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Articles 1–20