Benzhuo Lu
Benzhuo Lu
Professor, Institute of Computational Mathematics and Scientific/Engineering Computing
Verified email at - Homepage
Cited by
Cited by
Recent progress in numerical methods for the Poisson-Boltzmann equation in biophysical applications
BZ Lu, YC Zhou, MJ Holst, JA McCammon
Commun Comput Phys 3 (5), 973-1009, 2008
Poisson–Nernst–Planck equations for simulating biomolecular diffusion–reaction processes I: Finite element solutions
B Lu, MJ Holst, JA McCammon, YC Zhou
Journal of computational physics 229 (19), 6979-6994, 2010
Order N algorithm for computation of electrostatic interactions in biomolecular systems
B Lu, X Cheng, J Huang, JA McCammon
Proceedings of the National Academy of Sciences 103 (51), 19314-19319, 2006
Computational analysis and prediction of the binding motif and protein interacting partners of the Abl SH3 domain
T Hou, K Chen, WA McLaughlin, B Lu, W Wang
PLoS computational biology 2 (1), e1, 2006
Poisson-Nernst-Planck equations for simulating biomolecular diffusion-reaction processes II: Size effects on ionic distributions and diffusion-reaction rates
B Lu, YC Zhou
Biophysical journal 100 (10), 2475-2485, 2011
Computation of electrostatic forces between solvated molecules determined by the Poisson–Boltzmann equation using a boundary element method
B Lu, D Zhang, JA McCammon
The Journal of chemical physics 122 (21), 2005
Channel opening motion of α7 nicotinic acetylcholine receptor as suggested by normal mode analysis
X Cheng, B Lu, B Grant, RJ Law, JA McCammon
Journal of molecular biology 355 (2), 310-324, 2006
Electrodiffusion: a continuum modeling framework for biomolecular systems with realistic spatiotemporal resolution
B Lu, YC Zhou, GA Huber, SD Bond, MJ Holst, JA McCammon
The Journal of chemical physics 127 (13), 2007
Free Energy for the Permeation of Na+ and Cl Ions and Their Ion-Pair through a Zwitterionic Dimyristoyl Phosphatidylcholine Lipid Bilayer by Umbrella Integration …
IV Khavrutskii, AA Gorfe, B Lu, JA McCammon
Journal of the American Chemical Society 131 (5), 1706-1716, 2009
Improved ion transport and high energy conversion through hydrogel membrane with 3D interconnected nanopores
W Chen, Q Wang, J Chen, Q Zhang, X Zhao, Y Qian, C Zhu, L Yang, ...
Nano Letters 20 (8), 5705-5713, 2020
Prediction of binding affinities between the human amphiphysin-1 SH3 domain and its peptide ligands using homology modeling, molecular dynamics and molecular field analysis
T Hou, W McLaughlin, B Lu, K Chen, W Wang
Journal of proteome research 5 (1), 32-43, 2006
TMSmesh: A robust method for molecular surface mesh generation using a trace technique
M Chen, B Lu
Journal of Chemical Theory and Computation 7 (1), 203-212, 2011
A parallel finite element simulator for ion transport through three‐dimensional ion channel systems
B Tu, M Chen, Y Xie, L Zhang, B Eisenberg, B Lu
Journal of computational chemistry 34 (24), 2065-2078, 2013
An Adaptive Fast Multipole Boundary Element Method for Poisson− Boltzmann Electrostatics
B Lu, X Cheng, J Huang, JA McCammon
Journal of chemical theory and computation 5 (6), 1692-1699, 2009
Improved Boundary Element Methods for Poisson− Boltzmann Electrostatic Potential and Force Calculations
B Lu, JA McCammon
Journal of chemical theory and computation 3 (3), 1134-1142, 2007
Improved ion transport in hydrogel-based nanofluidics for osmotic energy conversion
W Chen, Q Zhang, Y Qian, W Xin, D Hao, X Zhao, C Zhu, XY Kong, B Lu, ...
ACS Central Science 6 (11), 2097-2104, 2020
AFMPB: an adaptive fast multipole Poisson–Boltzmann solver for calculating electrostatics in biomolecular systems
B Lu, X Cheng, J Huang, JA McCammon
Computer Physics Communications 181 (6), 1150-1160, 2010
“New-version-fast-multipole-method” accelerated electrostatic calculations in biomolecular systems
B Lu, X Cheng, JA McCammon
Journal of Computational Physics 226 (2), 1348-1366, 2007
Protein molecular dynamics with electrostatic force entirely determined by a single Poisson‐Boltzmann calculation
BZ Lu, WZ Chen, CX Wang, X Xu
Proteins: Structure, Function, and Bioinformatics 48 (3), 497-504, 2002
Release of ADP from the catalytic subunit of protein kinase A: A molecular dynamics simulation study
B Lu, CF Wong, JA McCammon
Protein science 14 (1), 159-168, 2005
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