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Haowen Zhang
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Year
Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm
H Cheng, GT Concepcion, X Feng, H Zhang, H Li
Nature Methods 18 (2), 170-175, 2021
23672021
Weighted minimizer sampling improves long read mapping
C Jain, A Rhie, H Zhang, C Chu, S Koren, A Phillippy
Bioinformatics, i111–i118, 2020
1622020
A comprehensive evaluation of long read error correction methods
H Zhang, C Jain, S Aluru
BMC Genomics 21 (6), 1-15, 2020
1352020
On the Complexity of Sequence-to-Graph Alignment
C Jain*, H Zhang*, Y Gao, S Aluru
Journal of Computational Biology, 2020
622020
Fast alignment and preprocessing of chromatin profiles with Chromap
H Zhang, L Song, X Wang, H Cheng, C Wang, CA Meyer, T Liu, M Tang, ...
Nature communications 12 (1), 6566, 2021
572021
Real-time mapping of nanopore raw signals
H Zhang, H Li, C Jain, H Cheng, KF Au, H Li, S Aluru
Bioinformatics 37 (Supplement_1), i477-i483, 2021
562021
Accelerating sequence alignment to graphs
C Jain, S Misra, H Zhang, A Dilthey, S Aluru
2019 IEEE International Parallel and Distributed Processing Symposium (IPDPS …, 2019
432019
Large expert-curated database for benchmarking document similarity detection in biomedical literature search
P Brown, R Consortium, Y Zhou
Database 2019, 2019
342019
Fast and efficient short read mapping based on a succinct hash index
H Zhang*, Y Chan*, K Fan, B Schmidt, W Liu
BMC bioinformatics 19 (1), 92, 2018
242018
Validating paired-end read alignments in sequence graphs
C Jain, H Zhang, A Dilthey, S Aluru
19th International Workshop on Algorithms in Bioinformatics (WABI 2019) 143 …, 2019
102019
Association of human leukocyte antigen alleles and supertypes with immunogenicity of oral rotavirus vaccine given to infants in China
Y Liu, T Guo, Q Yu, H Zhang, J Du, Y Zhang, S Xia, H Yang, Q Li
Medicine 97 (40), e12706, 2018
92018
Fast sequence to graph alignment using the graph wavefront algorithm
H Zhang, S Wu, S Aluru, H Li
arXiv preprint arXiv:2206.13574, 2022
62022
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Articles 1–12