Eric Nawrocki
Eric Nawrocki
National Center for Biotechnology (NCBI), NLM, NIH
Verified email at ncbi.nlm.nih.gov
Title
Cited by
Cited by
Year
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
D McDonald, MN Price, J Goodrich, EP Nawrocki, TZ DeSantis, A Probst, ...
The ISME journal 6 (3), 610-618, 2012
30862012
NCBI prokaryotic genome annotation pipeline
T Tatusova, M DiCuccio, A Badretdin, V Chetvernin, EP Nawrocki, ...
Nucleic acids research 44 (14), 6614-6624, 2016
15742016
Infernal 1.0: inference of RNA alignments
EP Nawrocki, DL Kolbe, SR Eddy
Bioinformatics 25 (10), 1335-1337, 2009
12142009
Infernal 1.1: 100-fold faster RNA homology searches
EP Nawrocki, SR Eddy
Bioinformatics 29 (22), 2933-2935, 2013
9802013
Rfam: updates to the RNA families database
PP Gardner, J Daub, JG Tate, EP Nawrocki, DL Kolbe, S Lindgreen, ...
Nucleic acids research 37 (suppl_1), D136-D140, 2009
7972009
Rfam 12.0: updates to the RNA families database
EP Nawrocki, SW Burge, A Bateman, J Daub, RY Eberhardt, SR Eddy, ...
Nucleic acids research 43 (D1), D130-D137, 2015
7382015
Rfam 11.0: 10 years of RNA families
SW Burge, J Daub, R Eberhardt, J Tate, L Barquist, EP Nawrocki, ...
Nucleic acids research 41 (D1), D226-D232, 2013
7352013
Rfam: Wikipedia, clans and the “decimal” release
PP Gardner, J Daub, J Tate, BL Moore, IH Osuch, S Griffiths-Jones, ...
Nucleic acids research 39 (suppl_1), D141-D145, 2010
4262010
Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families
I Kalvari, J Argasinska, N Quinones-Olvera, EP Nawrocki, E Rivas, ...
Nucleic acids research 46 (D1), D335-D342, 2018
3442018
Query-dependent banding (QDB) for faster RNA similarity searches
EP Nawrocki, SR Eddy
PLoS Comput Biol 3 (3), e56, 2007
3102007
Structural RNA homology search and alignment using covariance models
E Nawrocki
1652009
Integrating membrane transport with male gametophyte development and function through transcriptomics
KW Bock, D Honys, JM Ward, S Padmanaban, EP Nawrocki, KD Hirschi, ...
Plant Physiology 140 (4), 1151-1168, 2006
1622006
Virus Variation Resource–improved response to emergent viral outbreaks
EL Hatcher, SA Zhdanov, Y Bao, O Blinkova, EP Nawrocki, Y Ostapchuck, ...
Nucleic acids research 45 (D1), D482-D490, 2017
812017
RNIE: genome-wide prediction of bacterial intrinsic terminators
PP Gardner, L Barquist, A Bateman, EP Nawrocki, Z Weinberg
Nucleic acids research 39 (14), 5845-5852, 2011
602011
Non‐coding RNA analysis using the Rfam database
I Kalvari, EP Nawrocki, J Argasinska, N Quinones‐Olvera, RD Finn, ...
Current protocols in bioinformatics 62 (1), e51, 2018
572018
Annotating functional RNAs in genomes using Infernal
EP Nawrocki
RNA Sequence, Structure, and Function: Computational and Bioinformatic …, 2014
472014
Identification and Characterization of a Class of MALAT1-like Genomic Loci
B Zhang, YS Mao, SD Diermeier, IV Novikova, EP Nawrocki, TA Jones, ...
Cell reports 19 (8), 1723-1738, 2017
302017
RNAcentral: a hub of information for non-coding RNA sequences
Nucleic acids research 47 (D1), D221-D229, 2019
292019
Computational identification of functional RNA homologs in metagenomic data
EP Nawrocki, SR Eddy
RNA biology 10 (7), 1170-1179, 2013
282013
Group I introns are widespread in archaea
EP Nawrocki, TA Jones, SR Eddy
Nucleic acids research 46 (15), 7970-7976, 2018
132018
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Articles 1–20