Stephen Piccolo
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The molecular landscape of pediatric acute myeloid leukemia reveals recurrent structural alterations and age-specific mutational interactions
H Bolouri, JE Farrar, T Triche, RE Ries, EL Lim, TA Alonzo, Y Ma, ...
Nature medicine 24 (1), 103-112, 2018
A single-sample microarray normalization method to facilitate personalized-medicine workflows
SR Piccolo, Y Sun, JD Campbell, ME Lenburg, AH Bild, WE Johnson
Genomics 100 (6), 337-344, 2012
Alternative preprocessing of RNA-Sequencing data in The Cancer Genome Atlas leads to improved analysis results
M Rahman, LK Jackson, WE Johnson, DY Li, AH Bild, SR Piccolo
Bioinformatics 31 (22), 3666-3672, 2015
Prediction of overall survival for patients with metastatic castration-resistant prostate cancer: development of a prognostic model through a crowdsourced challenge with open …
J Guinney, T Wang, TD Laajala, KK Winner, JC Bare, EC Neto, SA Khan, ...
The Lancet Oncology 18 (1), 132-142, 2017
Tools and techniques for computational reproducibility
SR Piccolo, MB Frampton
Gigascience 5 (1), s13742-016-0135-4, 2016
Multiplatform single-sample estimates of transcriptional activation
SR Piccolo, MR Withers, OE Francis, AH Bild, WE Johnson
Proceedings of the National Academy of Sciences 110 (44), 17778-17783, 2013
Combating subclonal evolution of resistant cancer phenotypes
SW Brady, JA McQuerry, Y Qiao, SR Piccolo, G Shrestha, DF Jenkins, ...
Nature communications 8 (1), 1-15, 2017
Crowdsourced estimation of cognitive decline and resilience in Alzheimer's disease
GI Allen, N Amoroso, C Anghel, V Balagurusamy, CJ Bare, D Beaton, ...
Alzheimer's & Dementia 12 (6), 645-653, 2016
A cloud-based workflow to quantify transcript-expression levels in public cancer compendia
PJ Tatlow, SR Piccolo
Scientific reports 6 (1), 1-11, 2016
ASSIGN: context-specific genomic profiling of multiple heterogeneous biological pathways
Y Shen, M Rahman, SR Piccolo, D Gusenleitner, NN El-Chaar, L Cheng, ...
Bioinformatics 31 (11), 1745-1753, 2015
Clinical and molecular models of Glioblastoma multiforme survival
SR Piccolo, LJ Frey
International Journal of Data Mining and Bioinformatics 7 (3), 245-265, 2013
DeuteRater: a tool for quantifying peptide isotope precision and kinetic proteomics
BC Naylor, MT Porter, E Wilson, A Herring, S Lofthouse, A Hannemann, ...
Bioinformatics 33 (10), 1514-1520, 2017
Predicting phenotypic severity of uncertain gene variants in the RET proto-oncogene
DK Crockett, SR Piccolo, PG Ridge, RL Margraf, E Lyon, MS Williams, ...
PLoS One 6 (3), e18380, 2011
Evaluation of genetic risk scores for lipid levels using genome-wide markers in the Framingham Heart Study
SR Piccolo, RP Abo, K Allen-Brady, NJ Camp, S Knight, JL Anderson, ...
BMC proceedings 3 (7), 1-7, 2009
Genomic pathway analysis reveals that EZH2 and HDAC4 represent mutually exclusive epigenetic pathways across human cancers
AL Cohen, SR Piccolo, L Cheng, R Soldi, B Han, WE Johnson, AH Bild
BMC medical genomics 6 (1), 1-13, 2013
Histone deacetylase 6 (HDAC6) promotes the pro-survival activity of 14-3-3ζ via deacetylation of lysines within the 14-3-3ζ binding pocket
JB Mortenson, LN Heppler, CJ Banks, VK Weerasekara, MD Whited, ...
Journal of Biological Chemistry 290 (20), 12487-12496, 2015
Genomic classification of the RAS network identifies a personalized treatment strategy for lung cancer
NN El-Chaar, SR Piccolo, KM Boucher, AL Cohen, JT Chang, PJ Moos, ...
Molecular oncology 8 (7), 1339-1354, 2014
Potential new biomarkers for endometrial cancer
MH Townsend, ZE Ence, AM Felsted, AC Parker, SR Piccolo, RA Robison, ...
Cancer cell international 19 (1), 19, 2019
Systems approaches to cancer biology
TC Archer, EJ Fertig, SJC Gosline, M Hafner, SK Hughes, BA Joughin, ...
Cancer research 76 (23), 6774-6777, 2016
Membrane expression of thymidine kinase 1 and potential clinical relevance in lung, breast, and colorectal malignancies
EG Weagel, W Burrup, R Kovtun, EJ Velazquez, AM Felsted, ...
Cancer cell international 18 (1), 1-14, 2018
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