PLEK: a tool for predicting long non-coding RNAs and messenger RNAs based on an improved k-mer scheme A Li, J Zhang, Z Zhou BMC bioinformatics 15, 1-10, 2014 | 644 | 2014 |
ALDB: a domestic-animal long noncoding RNA database A Li, J Zhang, Z Zhou, L Wang, Y Liu, Y Liu PloS one 10 (4), e0124003, 2015 | 100 | 2015 |
Genome-wide identification of long intergenic noncoding RNA genes and their potential association with domestication in pigs ZY Zhou, AM Li, AC Adeola, YH Liu, DM Irwin, HB Xie, YP Zhang Genome biology and evolution 6 (6), 1387-1392, 2014 | 92 | 2014 |
MicroRNA and transcription factor co-regulatory networks and subtype classification of seminoma and non-seminoma in testicular germ cell tumors G Qin, S Mallik, R Mitra, A Li, P Jia, CM Eischen, Z Zhao Scientific Reports 10 (1), 852, 2020 | 50 | 2020 |
Critical microRNAs and regulatory motifs in cleft palate identified by a conserved miRNA–TF–gene network approach in humans and mice A Li, P Jia, S Mallik, R Fei, H Yoshioka, A Suzuki, J Iwata, Z Zhao Briefings in bioinformatics 21 (4), 1465-1478, 2020 | 36 | 2020 |
MicroRNA-655-3p and microRNA-497-5p inhibit cell proliferation in cultured human lip cells through the regulation of genes related to human cleft lip M Gajera, N Desai, A Suzuki, A Li, M Zhang, G Jun, P Jia, Z Zhao, J Iwata BMC medical genomics 12, 1-18, 2019 | 31 | 2019 |
H19, a long non-coding RNA, mediates transcription factors and target genes through interference of microRNAs in pan-cancer A Li, S Mallik, H Luo, P Jia, DF Lee, Z Zhao Molecular Therapy-Nucleic Acids 21, 180-191, 2020 | 29 | 2020 |
DNA methylation signatures of long intergenic noncoding RNAs in porcine adipose and muscle tissues ZY Zhou, A Li, LG Wang, DM Irwin, YH Liu, D Xu, XM Han, L Wang, SF Wu, ... Scientific reports 5 (1), 15435, 2015 | 26 | 2015 |
MicroRNA-374a,-4680, and-133b suppress cell proliferation through the regulation of genes associated with human cleft palate in cultured human palate cells A Suzuki, A Li, M Gajera, N Abdallah, M Zhang, Z Zhao, J Iwata BMC medical genomics 12, 1-13, 2019 | 24 | 2019 |
Genome‐scale identification of mi RNA–mRNA and mi RNA–lnc RNA interactions in domestic animals A Li, J Zhang, Z Zhou, L Wang, X Sun, Y Liu Animal genetics 46 (6), 716-719, 2015 | 23 | 2015 |
Network-based identification of critical regulators as putative drivers of human cleft lip A Li, G Qin, A Suzuki, M Gajera, J Iwata, P Jia, Z Zhao BMC medical genomics 12, 119-132, 2019 | 19 | 2019 |
Genome wide analyses uncover allele-specific RNA editing in human and mouse ZY Zhou, Y Hu, A Li, YJ Li, H Zhao, SQ Wang, NO Otecko, D Zhang, ... Nucleic acids research 46 (17), 8888-8897, 2018 | 18 | 2018 |
PigVar: a database of pig variations and positive selection signatures ZY Zhou, A Li, NO Otecko, YH Liu, DM Irwin, L Wang, AC Adeola, J Zhang, ... Database 2017, bax048, 2017 | 15 | 2017 |
Deep learning structure for cross-domain sentiment classification based on improved cross entropy and weight R Fei, Q Yao, Y Zhu, Q Xu, A Li, H Wu, B Hu Scientific Programming 2020, 2020 | 11 | 2020 |
Prediction of cancer-associated piRNA–mRNA and piRNA–lncRNA interactions by integrated analysis of expression and sequence data Y Liu, J Zhang, A Li, Z Liu, Z He, X Yuan, S Tuo Tsinghua Science and Technology 23 (2), 115-125, 2018 | 9 | 2018 |
Detecting pan-cancer conserved microRNA modules from microRNA expression profiles across multiple cancers Z Liu, J Zhang, X Yuan, B Liu, Y Liu, A Li, Y Zhang, X Sun, S Tuo Molecular BioSystems 11 (8), 2227-2237, 2015 | 9 | 2015 |
Detection of Piwi-interacting RNAs based on sequence features YJ Liu, JY Zhang, AM Li, ZW Liu, YY Zhang, XH Sun Genet. Mol. Res 15, 2016 | 7 | 2016 |
A Bayesian network based algorithm for gene regulatory network reconstruction B Yang, J Zhang, J Shang, A Li 2011 IEEE International Conference on Signal Processing, Communications and …, 2011 | 7 | 2011 |
Worldwide tracing of mutations and the evolutionary dynamics of SARS-CoV-2 ZY Zhou, H Liu, YD Zhang, YQ Wu, MS Peng, A Li, DM Irwin, H Li, J Lu, ... biorxiv, 2020.08. 07.242263, 2020 | 6 | 2020 |
Identification of PIWI-interacting RNA modules by weighted correlation network analysis Y Liu, J Zhang, A Li, Y Zhang, Y Li, X Yuan, Z He, Z Liu, S Tuo Cluster Computing 22, 707-717, 2019 | 4 | 2019 |