Pedro Mendes - Google Scholar Citations

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	All	Since 2015
Citations	20975	7402
h-index	53	39
i10-index	108	76

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Co-authors

Douglas KellUniversity of ManchesterVerified email at manchester.ac.uk
Lloyd W. SumnerUniversity of Missouri, Biochemistry Dept, Christopher S. Bond Life Sciences Center, MU MetabolomicsVerified email at missouri.edu
Kieran SmallboneMCISB / Mathematics / Computer Science, University of ManchesterVerified email at manchester.ac.uk
Stefan HoopsResearch Associate Professor, Biocomplexity Institute & Initiative, University of VirginiaVerified email at virginia.edu
Alberto de la FuenteQatar Biomedical Research InstituteVerified email at hbku.edu.qa
Neil SwainstonUniversity of LiverpoolVerified email at liverpool.ac.uk
Jürgen PahleIndependent Group Leader, Heidelberg University, GermanyVerified email at bioquant.uni-heidelberg.de
Richard DixonDistinguished Professor of Biology, University of North TexasVerified email at unt.edu
Hans WesterhoffUniversity of Amsterdam, VU University Amsterdam, University of ManchesterVerified email at manchester.ac.uk
Julio R. BangaResearch Professor, IIM-CSIC, Vigo (Spain)Verified email at iim.csic.es
Oliver FiehnUC DavisVerified email at ucdavis.edu
Joseph Olufemi DadaProfessor of Electrical Engineering, Afe Babalola University, Ado-EkitiVerified email at abuad.edu.ng
Snoep JLStellenbosch University; Manchester University; Vrije Universiteit AmsterdamVerified email at sun.ac.za
Vladimir ShulaevProfessor, University of North TexasVerified email at unt.edu
Kazuki SaitoProfessor, Pharmaceutical Sciences, Chiba University, Group Director of RIKEN CSRSVerified email at faculty.chiba-u.jp
Norman W. PatonProfessor of Computer Science, University of ManchesterVerified email at cs.man.ac.uk
Warwick DunnUniversity of Birmingham, UKVerified email at bham.ac.uk
Paul DobsonScruffy Biotech LtdVerified email at manchester.ac.uk
Naglis MalysSenior Research Fellow, University of NottinghamVerified email at nottingham.ac.uk
Wei ShaResearch Associate Professor -- University of North Carolina at CharlotteVerified email at uncc.edu

Pedro Mendes

University of Connecticut

Verified email at uchc.edu - Homepage

systems biology bioinformatics computational biology modeling simulation


Title	Cited by	Year
The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models M Hucka, A Finney, HM Sauro, H Bolouri, JC Doyle, H Kitano, AP Arkin, ... Bioinformatics 19 (4), 524-531, 2003	3154	2003
COPASI—a complex pathway simulator S Hoops, S Sahle, R Gauges, C Lee, J Pahle, N Simus, M Singhal, L Xu, ... Bioinformatics 22 (24), 3067-3074, 2006	2099	2006
Plant metabolomics: large-scale phytochemistry in the functional genomics era LW Sumner, P Mendes, RA Dixon Phytochemistry 62 (6), 817-836, 2003	1145	2003
Parameter estimation in biochemical pathways: a comparison of global optimization methods CG Moles, P Mendes, JR Banga Genome research 13 (11), 2467-2474, 2003	980	2003
A community-driven global reconstruction of human metabolism I Thiele, N Swainston, RMT Fleming, A Hoppe, S Sahoo, MK Aurich, ... Nature biotechnology 31 (5), 419, 2013	853	2013
GEPASI: a software package for modelling the dynamics, steady states and control of biochemical and other systems P Mendes Bioinformatics 9 (5), 563-571, 1993	829	1993
Non-linear optimization of biochemical pathways: applications to metabolic engineering and parameter estimation. P Mendes, D Kell Bioinformatics (Oxford, England) 14 (10), 869-883, 1998	804	1998
Potential of metabolomics as a functional genomics tool RJ Bino, RD Hall, O Fiehn, J Kopka, K Saito, J Draper, BJ Nikolau, ... Trends in plant science 9 (9), 418-425, 2004	755	2004
Biochemistry by numbers: simulation of biochemical pathways with Gepasi 3 P Mendes Trends in biochemical sciences 22 (9), 361-363, 1997	720	1997
Minimum information requested in the annotation of biochemical models (MIRIAM) N Le Novère, A Finney, M Hucka, US Bhalla, F Campagne, ... Nature biotechnology 23 (12), 1509-1515, 2005	576	2005
A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology MJ Herrgård, N Swainston, P Dobson, WB Dunn, KY Arga, M Arvas, ... Nature biotechnology 26 (10), 1155-1160, 2008	572	2008
Discovery of meaningful associations in genomic data using partial correlation coefficients A De La Fuente, N Bing, I Hoeschele, P Mendes Bioinformatics 20 (18), 3565-3574, 2004	549	2004
Myo-inositol oxygenase offers a possible entry point into plant ascorbate biosynthesis A Lorence, BI Chevone, P Mendes, CL Nessler Plant Physiology 134 (3), 1200-1205, 2004	372	2004
Metabolic profiling of Medicago truncatula cell cultures reveals the effects of biotic and abiotic elicitors on metabolism CD Broeckling, DV Huhman, MA Farag, JT Smith, GD May, P Mendes, ... Journal of experimental botany 56 (410), 323-336, 2005	371	2005
A hybrid approach for efficient and robust parameter estimation in biochemical pathways M Rodriguez-Fernandez, P Mendes, JR Banga Biosystems 83 (2-3), 248-265, 2006	354	2006
Gene networks: how to put the function in genomics P Brazhnik, A de la Fuente, P Mendes TRENDS in Biotechnology 20 (11), 467-472, 2002	340	2002
A proposed framework for the description of plant metabolomics experiments and their results H Jenkins, N Hardy, M Beckmann, J Draper, AR Smith, J Taylor, O Fiehn, ... Nature biotechnology 22 (12), 1601-1606, 2004	295	2004
The metabolomics standards initiative (MSI) O Fiehn, D Robertson, J Griffin, M van der Werf, B Nikolau, N Morrison, ... Metabolomics 3 (3), 175-178, 2007	284	2007
Artificial gene networks for objective comparison of analysis algorithms P Mendes, W Sha, K Ye Bioinformatics 19 (suppl_2), ii122-ii129, 2003	267	2003
The origin of correlations in metabolomics data D Camacho, A De La Fuente, P Mendes Metabolomics 1 (1), 53-63, 2005	244	2005

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