Geert Geeven
Geert Geeven
Hubrecht Institute-KNAW & University Medical Centre Utrecht
Verified email at hubrecht.eu - Homepage
Title
Cited by
Cited by
Year
YAP drives growth by controlling transcriptional pause release from dynamic enhancers
GG Galli, M Carrara, WC Yuan, C Valdes-Quezada, B Gurung, ...
Molecular cell 60 (2), 328-337, 2015
1682015
Targeted sequencing by proximity ligation for comprehensive variant detection and local haplotyping
PJP De Vree, E De Wit, M Yilmaz, M Van De Heijning, P Klous, ...
Nature biotechnology 32 (10), 1019-1025, 2014
1672014
Genome-wide profiling of p53-regulated enhancer RNAs uncovers a subset of enhancers controlled by a lncRNA
N Léveillé, CA Melo, K Rooijers, A Díaz-Lagares, SA Melo, G Korkmaz, ...
Nature communications 6 (1), 1-12, 2015
1492015
Enhancer hubs and loop collisions identified from single-allele topologies
A Allahyar, C Vermeulen, BAM Bouwman, PHL Krijger, MJAM Verstegen, ...
Nature genetics 50 (8), 1151-1160, 2018
1152018
Epigenomic annotation of gene regulatory alterations during evolution of the primate brain
MW Vermunt, SC Tan, B Castelijns, G Geeven, P Reinink, E De Bruijn, ...
Nature neuroscience 19 (3), 494-503, 2016
74*2016
Cause and consequence of tethering a SubTAD to different nuclear compartments
PJ Wijchers, PHL Krijger, G Geeven, Y Zhu, A Denker, MJAM Verstegen, ...
Molecular cell 61 (3), 461-473, 2016
702016
Characterization and dynamics of pericentromere-associated domains in mice
PJ Wijchers, G Geeven, M Eyres, AJ Bergsma, M Janssen, M Verstegen, ...
Genome research 25 (7), 958-969, 2015
642015
Large-scale identification of coregulated enhancer networks in the adult human brain
MW Vermunt, P Reinink, J Korving, E de Bruijn, PM Creyghton, O Basak, ...
Cell reports 9 (2), 767-779, 2014
612014
Sensitive monogenic noninvasive prenatal diagnosis by targeted haplotyping
C Vermeulen, G Geeven, E de Wit, MJAM Verstegen, RPM Jansen, ...
The American Journal of Human Genetics 101 (3), 326-339, 2017
572017
Local compartment changes and regulatory landscape alterations in histone H1-depleted cells
G Geeven, Y Zhu, BJ Kim, BA Bartholdy, SM Yang, TS Macfarlan, ...
Genome biology 16 (1), 1-15, 2015
442015
peakC: a flexible, non-parametric peak calling package for 4C and Capture-C data
G Geeven, H Teunissen, W de Laat, E de Wit
Nucleic acids research 46 (15), e91-e91, 2018
352018
Enhancers reside in a unique epigenetic environment during early zebrafish development
LJT Kaaij, M Mokry, M Zhou, M Musheev, G Geeven, ASJ Melquiond, ...
Genome biology 17 (1), 1-15, 2016
352016
Identification of context-specific gene regulatory networks with GEMULA—gene expression modeling using LAsso
G Geeven, RE van Kesteren, AB Smit, MCM de Gunst
Bioinformatics 28 (2), 214-221, 2012
352012
4C-seq from beginning to end: A detailed protocol for sample preparation and data analysis
PHL Krijger, G Geeven, V Bianchi, CRE Hilvering, W de Laat
Methods 170, 17-32, 2020
252020
Deletion/Substitution/Addition (DSA) model selection algorithm applied to the study of archaeological settlement patterning
R Fernandes, G Geeven, S Soetens, V Klontza-Jaklova
Journal of Archaeological Science 38 (9), 2293-2300, 2011
242011
LLM3D: a log-linear modeling-based method to predict functional gene regulatory interactions from genome-wide expression data
G Geeven, HD MacGillavry, R Eggers, MM Sassen, J Verhaagen, AB Smit, ...
Nucleic acids research 39 (13), 5313-5327, 2011
242011
A p53-bound enhancer region controls a long intergenic noncoding RNA required for p53 stress response
CA Melo, N Léveillé, K Rooijers, PJ Wijchers, G Geeven, A Tal, SA Melo, ...
Oncogene 35 (33), 4399-4406, 2016
172016
Hominin-specific regulatory elements selectively emerged in oligodendrocytes and are disrupted in autism patients
B Castelijns, ML Baak, IS Timpanaro, CRM Wiggers, MW Vermunt, ...
Nature communications 11 (1), 1-12, 2020
102020
5.4. Mapping the probability of settlement location for the Malia-Lasithi region (Crete, Greece) during the Minoan Protopalatial period
R Fernandes, G Geeven, S Soetens, V Klontza-Jaklova
Landscape Archaeology between Art and Science, 353-368, 2012
92012
Epigenetic analyses of human left atrial tissue identifies gene networks underlying atrial fibrillation
AW Hall, M Chaffin, C Roselli, H Lin, SA Lubitz, V Bianchi, G Geeven, ...
Circulation: Genomic and Precision Medicine 13 (6), e003085, 2020
62020
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Articles 1–20