| deepTools2: a next generation web server for deep-sequencing data analysis F Ramírez, DP Ryan, B Grüning, V Bhardwaj, F Kilpert, AS Richter, ... Nucleic acids research 44 (W1), W160-W165, 2016 | 1747 | 2016 |
| IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions A Busch, AS Richter, R Backofen Bioinformatics 24 (24), 2849-2856, 2008 | 466 | 2008 |
| The International Human Epigenome Consortium: a blueprint for scientific collaboration and discovery HG Stunnenberg, S Abrignani, D Adams, M de Almeida, L Altucci, V Amin, ... Cell 167 (5), 1145-1149, 2016 | 272 | 2016 |
| CopraRNA and IntaRNA: predicting small RNA targets, networks and interaction domains PR Wright, J Georg, M Mann, DA Sorescu, AS Richter, S Lott, R Kleinkauf, ... Nucleic acids research 42 (W1), W119-W123, 2014 | 245 | 2014 |
| Freiburg RNA Tools: a web server integrating IntaRNA, ExpaRNA and LocARNA C Smith, S Heyne, AS Richter, S Will, R Backofen Nucleic acids research 38 (suppl_2), W373-W377, 2010 | 227 | 2010 |
| Comparative genomics boosts target prediction for bacterial small RNAs PR Wright, AS Richter, K Papenfort, M Mann, J Vogel, WR Hess, ... Proceedings of the National Academy of Sciences 110 (37), E3487-E3496, 2013 | 193 | 2013 |
| The small RNA PhrS stimulates synthesis of the Pseudomonas aeruginosa quinolone signal E Sonnleitner, N Gonzalez, T Sorger‐Domenigg, S Heeb, AS Richter, ... Molecular microbiology 80 (4), 868-885, 2011 | 155 | 2011 |
| Epigenomic Profiling of Human CD4+ T Cells Supports a Linear Differentiation Model and Highlights Molecular Regulators of Memory Development P Durek, K Nordström, G Gasparoni, A Salhab, C Kressler, M De Almeida, ... Immunity 45 (5), 1148-1161, 2016 | 116 | 2016 |
| Standardizing chromatin research: a simple and universal method for ChIP-seq L Arrigoni, AS Richter, E Betancourt, K Bruder, S Diehl, T Manke, ... Nucleic acids research 44 (7), e67-e67, 2016 | 70 | 2016 |
| Accessibility and conservation: general features of bacterial small RNA–mRNA interactions? A Richter, R Backofen RNA biology 9 (7), 954-965, 2012 | 60 | 2012 |
| Epigenetic dynamics of monocyte-to-macrophage differentiation S Wallner, C Schröder, E Leitão, T Berulava, C Haak, D Beißer, ... Epigenetics & chromatin 9 (1), 1-17, 2016 | 58 | 2016 |
| Seed-based IntaRNA prediction combined with GFP-reporter system identifies mRNA targets of the small RNA Yfr1 AS Richter, C Schleberger, R Backofen, C Steglich Bioinformatics 26 (1), 1-5, 2010 | 58 | 2010 |
| An archaeal sRNA targeting cis - and trans -encoded mRNAs via two distinct domains D Jäger, SR Pernitzsch, AS Richter, R Backofen, CM Sharma, RA Schmitz Nucleic acids research 40 (21), 10964-10979, 2012 | 56 | 2012 |
| PETcofold: predicting conserved interactions and structures of two multiple alignments of RNA sequences SE Seemann, AS Richter, T Gesell, R Backofen, J Gorodkin Bioinformatics 27 (2), 211-219, 2011 | 54 | 2011 |
| Freiburg RNA tools: a central online resource for RNA-focused research and teaching M Raden, SM Ali, OS Alkhnbashi, A Busch, F Costa, JA Davis, ... Nucleic acids research 46 (W1), W25-W29, 2018 | 39 | 2018 |
| snakePipes: facilitating flexible, scalable and integrative epigenomic analysis V Bhardwaj, S Heyne, K Sikora, L Rabbani, M Rauer, F Kilpert, AS Richter, ... Bioinformatics 35 (22), 4757-4759, 2019 | 24 | 2019 |
| Cell type specific gene expression analysis of prostate needle biopsies resolves tumor tissue heterogeneity M Krönig, M Walter, V Drendel, M Werner, CA Jilg, AS Richter, ... Oncotarget 6 (2), 1302, 2015 | 22 | 2015 |
| Hierarchical folding of multiple sequence alignments for the prediction of structures and RNA-RNA interactions SE Seemann, AS Richter, J Gorodkin, R Backofen Algorithms for Molecular Biology 5 (1), 1-13, 2010 | 20 | 2010 |
| Forward genetic screens in zebrafish identify pre-mRNA-processing pathways regulating early T cell development N Iwanami, K Sikora, AS Richter, M Mönnich, L Guerri, C Soza-Ried, ... Cell reports 17 (9), 2259-2270, 2016 | 12 | 2016 |
| Bioinformatics of prokaryotic RNAs R Backofen, F Amman, F Costa, S Findeiß, AS Richter, PF Stadler RNA biology 11 (5), 470-483, 2014 | 12 | 2014 |
Rolf BackofenProfessor für Bioinformatik, Universität FreiburgVerified email at informatik.uni-freiburg.de
