Follow
Samuel M. Nicholls
Samuel M. Nicholls
Verified email at bham.ac.uk - Homepage
Title
Cited by
Cited by
Year
Evaluating the effects of SARS-CoV-2 spike mutation D614G on transmissibility and pathogenicity
E Volz, V Hill, JT McCrone, A Price, D Jorgensen, O’Toole, J Southgate, ...
Cell 184 (1), 64-75. e11, 2021
10562021
Evolution and epidemic spread of SARS-CoV-2 in Brazil
DS Candido, IM Claro, JG De Jesus, WM Souza, FRR Moreira, ...
Science 369 (6508), 1255-1260, 2020
6522020
Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK
L du Plessis, JT McCrone, AE Zarebski, V Hill, C Ruis, B Gutierrez, ...
Science 371 (6530), 708-712, 2021
3672021
SARS-CoV-2 within-host diversity and transmission
KA Lythgoe, M Hall, L Ferretti, M de Cesare, G MacIntyre-Cockett, ...
Science 372 (6539), eabg0821, 2021
2942021
Ultra-deep, long-read nanopore sequencing of mock microbial community standards
SM Nicholls, JC Quick, S Tang, NJ Loman
Gigascience 8 (5), giz043, 2019
2472019
Exploring the genetic architecture of inflammatory bowel disease by whole-genome sequencing identifies association at ADCY7
Y Luo, KM de Lange, L Jostins, L Moutsianas, J Randall, NA Kennedy, ...
Nature Genetics, 2017
2042017
Generation and transmission of interlineage recombinants in the SARS-CoV-2 pandemic
B Jackson, MF Boni, MJ Bull, A Colleran, RM Colquhoun, AC Darby, ...
Cell 184 (20), 5179-5188. e8, 2021
2022021
An integrated national scale SARS-CoV-2 genomic surveillance network
DM Aanensen, K Abudahab, A Adams, S Afifi, MT Alam, A Alderton, ...
Elsevier, 0
173*
CLIMB-COVID: continuous integration supporting decentralised sequencing for SARS-CoV-2 genomic surveillance
SM Nicholls, R Poplawski, MJ Bull, A Underwood, M Chapman, ...
Genome Biology 22 (1), 1-21, 2021
662021
In-field metagenome and 16S rRNA gene amplicon nanopore sequencing robustly characterize glacier microbiota
A Edwards, AR Debbonaire, SM Nicholls, SME Rassner, B Sattler, ...
bioRxiv, 073965, 2019
402019
Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package
EJ Griffiths, RE Timme, CI Mendes, AJ Page, NF Alikhan, D Fornika, ...
GigaScience 11, 2022
222022
On the complexity of haplotyping a microbial community
SM Nicholls, W Aubrey, K De Grave, L Schietgat, CJ Creevey, A Clare
Bioinformatics 37 (10), 1360-1366, 2021
182021
The PHA4GE SARS-CoV-2 contextual data specification for open genomic epidemiology
EJ Griffiths, RE Timme, AJ Page, NF Alikhan, D Fornika, F Maguire, ...
MDPI AG, 2020
142020
Probabilistic recovery of cryptic haplotypes from metagenomic data
SM Nicholls, W Aubrey, K De Grave, L Schietgat, CJ Creevey, A Clare
bioRxiv, 117838, 2017
42017
Goldilocks: a tool for identifying genomic regions that are ‘just right’
SM Nicholls, A Clare, JC Randall
Bioinformatics 32 (13), 2047-2049, 2016
32016
Advances in the recovery of haplotypes from the metagenome
SM Nicholls, W Aubrey, K de Grave, L Schietgat, CJ Creevey, A Clare
bioRxiv, 067215, 2016
32016
COVID-19 Genomics UK (COG-UK) Consortium, Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK
L du Plessis, JT McCrone, AE Zarebski, V Hill, C Ruis, B Gutierrez, ...
Science 371, 708-712, 2021
2*2021
Computational recovery of enzyme haplotypes from a metagenome
S Nicholls
Aberystwyth University, 2018
22018
Computational haplotype recovery and long-read validation identifies novel isoforms of industrially relevant enzymes from natural microbial communities
SM Nicholls, W Aubrey, A Edwards, K de Grave, S Huws, L Schietgat, ...
bioRxiv, 223404, 2017
22017
Defining the analytical and clinical sensitivity of the ARTIC method for the detection of SARS-CoV-2
NF Alikhan, J Quick, AJ Trotter, SC Robson, M Bashton, GL Kay_, ...
medRxiv, 2021
12021
The system can't perform the operation now. Try again later.
Articles 1–20