Rafi Ahmad
Rafi Ahmad
INN, Hamar and UiT, Tromsø, Norway
Verified email at - Homepage
Cited by
Cited by
Ferric uptake regulator protein: binding free energy calculations and per‐residue free energy decomposition
R Ahmad, BO Brandsdal, I Michaud‐Soret, NP Willassen
Proteins: Structure, Function, and Bioinformatics 75 (2), 373-386, 2009
Rapid identification of pathogens, antibiotic resistance genes and plasmids in blood cultures by nanopore sequencing
AM Taxt, E Avershina, SA Frye, U Naseer, R Ahmad
Scientific reports 10 (1), 1-11, 2020
Distribution of siderophore gene systems on a Vibrionaceae phylogeny: Database searches, phylogenetic analyses and evolutionary perspectives
SK Thode, E Rojek, M Kozlowski, R Ahmad, P Haugen
PloS one 13 (2), e0191860, 2018
Structural and computational investigations of VIM-7: Insights into the substrate specificity of VIM metallo-β-lactamases
PS Borra, HKS Leiros, R Ahmad, J Spencer, I Leiros, TR Walsh, ...
Journal of molecular biology 411 (1), 174-189, 2011
The catalytic domain CysPc of the DEK 1 calpain is functionally conserved in land plants
Z Liang, V Demko, RC Wilson, KA Johnson, R Ahmad, PF Perroud, ...
The Plant Journal 75 (5), 742-754, 2013
Expression profiling reveals Spot 42 small RNA as a key regulator in the central metabolism of Aliivibrio salmonicida
GÅ Hansen, R Ahmad, E Hjerde, CG Fenton, NP Willassen, P Haugen
BMC genomics 13 (1), 1-12, 2012
Prediction and experimental testing of ferric uptake regulator regulons in vibrios
R Ahmad, E Hjerde, GÅ Hansen, P Haugen, NP Willassen
Microbial Physiology 16 (3-4), 159-168, 2009
DNA methylation patterns vary in boar sperm cells with different levels of DNA fragmentation
A Khezri, B Narud, EB Stenseth, A Johannisson, FD Myromslien, ...
BMC genomics 20 (1), 1-15, 2019
Large expert-curated database for benchmarking document similarity detection in biomedical literature search
P Brown, AC Tan, MA El-Esawi, T Liehr, O Blanck, DP Gladue, ...
Database 2019, 2019
RiBoSOM: Rapid bacterial genome identification using self-organizing map implemented on the synchoros SiLago platform
Y Yang, D Stathis, P Sharma, K Paul, A Hemani, M Grabherr, R Ahmad
Proceedings of the 18th International Conference on Embedded Computer …, 2018
VX680 binding in Aurora A: π− π interactions involving the conserved aromatic amino acid of the flexible glycine-rich loop
TM Oliveira, R Ahmad, RA Engh
The Journal of Physical Chemistry A 115 (16), 3895-3904, 2011
AMR-Diag: Neural network based genotype-to-phenotype prediction of resistance towards β-lactams in Escherichia coli and Klebsiella pneumoniae
E Avershina, P Sharma, AM Taxt, H Singh, SA Frye, K Paul, A Kapil, ...
Computational and Structural Biotechnology Journal 19, 1896-1906, 2021
Plasmid identification and plasmid-mediated antimicrobial gene detection in Norwegian isolates
A Khezri, E Avershina, R Ahmad
Microorganisms 9 (1), 52, 2020
Developing a hybrid antimicrobial resistance surveillance system in India: Needs & challenges
J Kaur, A Sharma, AS Dhama, H Buttolia, VC Ohri, K Walia, AK Sharma, ...
The Indian Journal of Medical Research 149 (2), 299, 2019
Nanopore-based DNA sequencing in clinical microbiology: Preliminary assessment of basic requirements
H Harstad, R Ahmad, A Bredberg
bioRxiv, 382580, 2018
Prediction, microarray and northern blot analyses identify new intergenic small RNAs in Aliivibrio salmonicida
R Ahmad, GÅ Hansen, H Hansen, E Hjerde, HL Pedersen, SM Paulsen, ...
Microbial Physiology 22 (6), 352-360, 2012
Experimental and computational characterization of the ferric uptake regulator from Aliivibrio salmonicida (Vibrio salmonicida)
HL Pedersen, R Ahmad, EK Riise, HKS Leiros, S Hauglid, S Espelid, ...
The Journal of Microbiology 48 (2), 174-183, 2010
Hybrid assembly provides improved resolution of plasmids, antimicrobial resistance genes, and virulence factors in escherichia coli and klebsiella pneumoniae clinical isolates
A Khezri, E Avershina, R Ahmad
Microorganisms 9 (12), 2560, 2021
Vitamin D3 supplementation does not enhance the effects of resistance training in older adults
KS Mølmen, D Hammarström, K Pedersen, AC Lian Lie, RB Steile, ...
Journal of cachexia, sarcopenia and muscle 12 (3), 599-628, 2021
Increased biological relevance of transcriptome analyses in human skeletal muscle using a model-specific pipeline
Y Khan, D Hammarström, BR Rønnestad, S Ellefsen, R Ahmad
BMC bioinformatics 21 (1), 1-32, 2020
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