|Whole-genome sequencing to delineate Mycobacterium tuberculosis outbreaks: a retrospective observational study|
TM Walker, CLC Ip, RH Harrell, JT Evans, G Kapatai, MJ Dedicoat, ...
The Lancet infectious diseases 13 (2), 137-146, 2013
|Diverse sources of C. difficile infection identified on whole-genome sequencing|
DW Eyre, ML Cule, DJ Wilson, D Griffiths, A Vaughan, L O'Connor, CLC Ip, ...
N Engl J Med 369, 1195-1205, 2013
|Whole-genome sequencing for prediction of Mycobacterium tuberculosis drug susceptibility and resistance: a retrospective cohort study|
TM Walker, TA Kohl, SV Omar, J Hedge, CDO Elias, P Bradley, Z Iqbal, ...
The Lancet infectious diseases 15 (10), 1193-1202, 2015
|A pilot study of rapid benchtop sequencing of Staphylococcus aureus and Clostridium difficile for outbreak detection and surveillance|
DW Eyre, T Golubchik, NC Gordon, R Bowden, P Piazza, EM Batty, ...
BMJ open 2 (3), e001124, 2012
|Predicting antimicrobial susceptibilities for Escherichia coli and Klebsiella pneumoniae isolates using whole genomic sequence data|
N Stoesser, EM Batty, DW Eyre, M Morgan, DH Wyllie, C Del Ojo Elias, ...
Journal of Antimicrobial Chemotherapy 68 (10), 2234-2244, 2013
|Relationship Between Bacterial Strain Type, Host Biomarkers, and Mortality in Clostridium difficile Infection|
AS Walker, DW Eyre, DH Wyllie, KE Dingle, D Griffiths, B Shine, S Oakley, ...
Clinical infectious diseases 56 (11), 1589-1600, 2013
|Predictors of First Recurrence of Clostridium difficile Infection: Implications for Initial Management|
DW Eyre, AS Walker, D Wyllie, KE Dingle, D Griffiths, J Finney, ...
Clinical Infectious Diseases 55 (suppl_2), S77-S87, 2012
|Characterisation of Clostridium difficile hospital ward–based transmission using extensive epidemiological data and molecular typing|
AS Walker, DW Eyre, DH Wyllie, KE Dingle, RM Harding, L O'Connor, ...
PLoS medicine 9 (2), 2012
|Effects of control interventions on Clostridium difficile infection in England: an observational study|
KE Dingle, X Didelot, TP Quan, DW Eyre, N Stoesser, T Golubchik, ...
The Lancet Infectious Diseases 17 (4), 411-421, 2017
|Microevolutionary analysis of Clostridium difficile genomes to investigate transmission|
X Didelot, DW Eyre, M Cule, CLC Ip, MA Ansari, D Griffiths, A Vaughan, ...
Genome biology 13 (12), R118, 2012
|Evolutionary History of the Clostridium difficile Pathogenicity Locus|
KE Dingle, B Elliott, E Robinson, D Griffiths, DW Eyre, N Stoesser, ...
Genome biology and evolution 6 (1), 36-52, 2014
|Asymptomatic Clostridium difficile colonisation and onward transmission|
DW Eyre, D Griffiths, A Vaughan, T Golubchik, M Acharya, L O’Connor, ...
PloS one 8 (11), 2013
|A Candida auris Outbreak and Its Control in an Intensive Care Setting|
DW Eyre, AE Sheppard, H Madder, I Moir, R Moroney, TP Quan, ...
New England Journal of Medicine 379 (14), 1322-1331, 2018
|Gonorrhoea treatment failure caused by a Neisseria gonorrhoeae strain with combined ceftriaxone and high-level azithromycin resistance, England, February 2018|
DW Eyre, ND Sanderson, E Lord, N Regisford-Reimmer, K Chau, ...
Eurosurveillance 23 (27), 2018
|Whole-genome sequencing to determine transmission of Neisseria gonorrhoeae: an observational study|
D De Silva, J Peters, K Cole, MJ Cole, F Cresswell, G Dean, J Dave, ...
The Lancet Infectious Diseases 16 (11), 1295-1303, 2016
|Transmission of Staphylococcus aureus between health-care workers, the environment, and patients in an intensive care unit: a longitudinal cohort study based on whole-genome …|
JR Price, K Cole, A Bexley, V Kostiou, DW Eyre, T Golubchik, DJ Wilson, ...
The Lancet Infectious Diseases 17 (2), 207-214, 2017
|Detection of mixed infection from bacterial whole genome sequence data allows assessment of its role in Clostridium difficile transmission|
DW Eyre, ML Cule, D Griffiths, DW Crook, TEA Peto, AS Walker, ...
PLoS computational biology 9 (5), 2013
|Recombinational Switching of the Clostridium difficile S-Layer and a Novel Glycosylation Gene Cluster Revealed by Large-Scale Whole-Genome Sequencing|
KE Dingle, X Didelot, MA Ansari, DW Eyre, A Vaughan, D Griffiths, CLC Ip, ...
The Journal of infectious diseases 207 (4), 675-686, 2013
|Emergence and spread of predominantly community-onset Clostridium difficile PCR ribotype 244 infection in Australia, 2010 to 2012|
DW Eyre, L Tracey, B Elliott, C Slimings, PG Huntington, RL Stuart, ...
Eurosurveillance 20 (10), 21059, 2015
|WGS to predict antibiotic MICs for Neisseria gonorrhoeae|
DW Eyre, D De Silva, K Cole, J Peters, MJ Cole, YH Grad, W Demczuk, ...
Journal of antimicrobial chemotherapy 72 (7), 1937-1947, 2017