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Joshua P Earl
Joshua P Earl
Assistant Professor, Director of Clinical and Translational Bioinformatics, Drexel University
Verified email at drexel.edu - Homepage
Title
Cited by
Cited by
Year
Interaction between the microbiome and TP53 in human lung cancer
KL Greathouse, JR White, AJ Vargas, VV Bliskovsky, JA Beck, ...
Genome biology 19, 1-16, 2018
2942018
Meta-omic characterization of the marine invertebrate microbial consortium that produces the chemotherapeutic natural product ET-743
CM Rath, B Janto, J Earl, A Ahmed, FZ Hu, L Hiller, M Dahlgren, R Kreft, ...
ACS chemical biology 6 (11), 1244-1256, 2011
2412011
Comparative genomic analyses of 17 clinical isolates of Gardnerella vaginalis provide evidence of multiple genetically isolated clades consistent with subspeciation into genovars
A Ahmed, J Earl, A Retchless, SL Hillier, LK Rabe, TL Cherpes, E Powell, ...
Journal of bacteriology 194 (15), 3922-3937, 2012
1992012
Generation of Genic Diversity among Streptococcus pneumoniae Strains via Horizontal Gene Transfer during a Chronic Polyclonal Pediatric Infection
NL Hiller, A Ahmed, E Powell, DP Martin, R Eutsey, J Earl, B Janto, ...
PLoS pathogens 6 (9), e1001108, 2010
1812010
Species-level bacterial community profiling of the healthy sinonasal microbiome using Pacific Biosciences sequencing of full-length 16S rRNA genes
JP Earl, ND Adappa, J Krol, AS Bhat, S Balashov, RL Ehrlich, JN Palmer, ...
Microbiome 6, 1-26, 2018
1432018
The distributed genome hypothesis as a rubric for understanding evolution in situ during chronic bacterial biofilm infectious processes
GD Ehrlich, A Ahmed, J Earl, NL Hiller, JW Costerton, P Stoodley, JC Post, ...
FEMS Immunology & Medical Microbiology 59 (3), 269-279, 2010
1292010
Genome of alkaliphilic Bacillus pseudofirmus OF4 reveals adaptations that support the ability to grow in an external pH range from 7.5 to 11.4
B Janto, A Ahmed, M Ito, J Liu, DB Hicks, S Pagni, OJ Fackelmayer, ...
Environmental microbiology 13 (12), 3289-3309, 2011
912011
Comparative supragenomic analyses among the pathogens Staphylococcus aureus, Streptococcus pneumoniae, and Haemophilus influenzae Using a …
R Boissy, A Ahmed, B Janto, J Earl, BG Hall, JS Hogg, GD Pusch, ...
BMC genomics 12, 1-15, 2011
662011
Comparative analysis and supragenome modeling of twelve Moraxella catarrhalis clinical isolates
JJ Davie, J Earl, SPW de Vries, A Ahmed, FZ Hu, HJ Bootsma, K Stol, ...
BMC genomics 12, 1-17, 2011
622011
HIV-1 genetic variation resulting in the development of new quasispecies continues to be encountered in the peripheral blood of well-suppressed patients
W Dampier, MR Nonnemacher, J Mell, J Earl, GD Ehrlich, V Pirrone, ...
PloS one 11 (5), e0155382, 2016
492016
Comparing culture and molecular methods for the identification of microorganisms involved in necrotizing soft tissue infections
VB Rudkjøbing, TR Thomsen, Y Xu, R Melton-Kreft, A Ahmed, S Eickhardt, ...
BMC infectious diseases 16, 1-13, 2016
432016
The Tsk2/+ mouse fibrotic phenotype is due to a gain-of-function mutation in the PIIINP segment of the Col3a1 gene
KB Long, Z Li, CM Burgwin, SG Choe, V Martyanov, S Sassi-Gaha, ...
Journal of Investigative Dermatology 135 (3), 718-727, 2015
382015
Differences in genotype and virulence among four multidrug-resistant Streptococcus pneumoniae isolates belonging to the PMEN1 clone
NL Hiller, RA Eutsey, E Powell, JP Earl, B Janto, DP Martin, S Dawid, ...
PLoS One 6 (12), e28850, 2011
352011
Comparative Genomic Analyses of the Moraxella catarrhalis Serosensitive and Seroresistant Lineages Demonstrate Their Independent Evolution
JP Earl, SPW de Vries, A Ahmed, E Powell, MP Schultz, PWM Hermans, ...
Genome Biology and Evolution 8 (4), 955-974, 2016
282016
Nontypeable Haemophilus influenzae Genetic Islands Associated with Chronic Pulmonary Infection
L Zhang, J Xie, M Patel, A Bakhtyar, GD Ehrlich, A Ahmed, J Earl, ...
Public Library of Science 7 (9), e44730, 2012
272012
Genome rearrangements induce biofilm formation in Escherichia coli C – an old model organism with a new application in biofilm research
JE Król, DC Hall, S Balashov, S Pastor, J Sibert, J McCaffrey, S Lang, ...
BMC genomics 20, 1-18, 2019
242019
The bacterial guide to designing a diversified gene portfolio
KA Innamorati, JP Earl, SD Aggarwal, GD Ehrlich, NL Hiller
The pangenome: Diversity, dynamics and evolution of genomes, 51-87, 2020
212020
Design and validation of a supragenome array for determination of the genomic content of Haemophilus influenzae isolates
RA Eutsey, NL Hiller, JP Earl, BA Janto, ME Dahlgren, A Ahmed, E Powell, ...
BMC genomics 14, 1-16, 2013
172013
Virulence potential and genome-wide characterization of drug resistant Streptococcus pneumoniae clones selected in vivo by the 7-valent pneumococcal conjugate vaccine
N Frazão, NL Hiller, E Powell, J Earl, A Ahmed, R Sá-Leão, ...
PloS one 8 (9), e74867, 2013
152013
Whole genome sequencing of Streptomyces actuosus ISP-5337, Streptomyces sioyaensis B-5408, and Actinospica acidiphila B-2296 reveals secondary metabolomes with antibiotic potential
HM Majer, RL Ehrlich, A Ahmed, JP Earl, GD Ehrlich, J Beld
Biotechnology Reports 29, e00596, 2021
142021
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Articles 1–20