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Joshua P Earl
Joshua P Earl
Assistant Professor, Director of Clinical and Translational Bioinformatics, Drexel University
Подтвержден адрес электронной почты в домене drexel.edu - Главная страница
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Год
Interaction between the microbiome and TP53 in human lung cancer
KL Greathouse, JR White, AJ Vargas, VV Bliskovsky, JA Beck, ...
Genome biology 19, 1-16, 2018
2942018
Meta-omic characterization of the marine invertebrate microbial consortium that produces the chemotherapeutic natural product ET-743
CM Rath, B Janto, J Earl, A Ahmed, FZ Hu, L Hiller, M Dahlgren, R Kreft, ...
ACS chemical biology 6 (11), 1244-1256, 2011
2412011
Comparative genomic analyses of 17 clinical isolates of Gardnerella vaginalis provide evidence of multiple genetically isolated clades consistent with subspeciation into genovars
A Ahmed, J Earl, A Retchless, SL Hillier, LK Rabe, TL Cherpes, E Powell, ...
Journal of bacteriology 194 (15), 3922-3937, 2012
1992012
Generation of Genic Diversity among Streptococcus pneumoniae Strains via Horizontal Gene Transfer during a Chronic Polyclonal Pediatric Infection
NL Hiller, A Ahmed, E Powell, DP Martin, R Eutsey, J Earl, B Janto, ...
PLoS pathogens 6 (9), e1001108, 2010
1812010
Species-level bacterial community profiling of the healthy sinonasal microbiome using Pacific Biosciences sequencing of full-length 16S rRNA genes
JP Earl, ND Adappa, J Krol, AS Bhat, S Balashov, RL Ehrlich, JN Palmer, ...
Microbiome 6, 1-26, 2018
1432018
The distributed genome hypothesis as a rubric for understanding evolution in situ during chronic bacterial biofilm infectious processes
GD Ehrlich, A Ahmed, J Earl, NL Hiller, JW Costerton, P Stoodley, JC Post, ...
FEMS Immunology & Medical Microbiology 59 (3), 269-279, 2010
1292010
Genome of alkaliphilic Bacillus pseudofirmus OF4 reveals adaptations that support the ability to grow in an external pH range from 7.5 to 11.4
B Janto, A Ahmed, M Ito, J Liu, DB Hicks, S Pagni, OJ Fackelmayer, ...
Environmental microbiology 13 (12), 3289-3309, 2011
912011
Comparative supragenomic analyses among the pathogens Staphylococcus aureus, Streptococcus pneumoniae, and Haemophilus influenzae Using a …
R Boissy, A Ahmed, B Janto, J Earl, BG Hall, JS Hogg, GD Pusch, ...
BMC genomics 12, 1-15, 2011
662011
Comparative analysis and supragenome modeling of twelve Moraxella catarrhalis clinical isolates
JJ Davie, J Earl, SPW de Vries, A Ahmed, FZ Hu, HJ Bootsma, K Stol, ...
BMC genomics 12, 1-17, 2011
622011
HIV-1 genetic variation resulting in the development of new quasispecies continues to be encountered in the peripheral blood of well-suppressed patients
W Dampier, MR Nonnemacher, J Mell, J Earl, GD Ehrlich, V Pirrone, ...
PloS one 11 (5), e0155382, 2016
492016
Comparing culture and molecular methods for the identification of microorganisms involved in necrotizing soft tissue infections
VB Rudkjøbing, TR Thomsen, Y Xu, R Melton-Kreft, A Ahmed, S Eickhardt, ...
BMC infectious diseases 16, 1-13, 2016
432016
The Tsk2/+ mouse fibrotic phenotype is due to a gain-of-function mutation in the PIIINP segment of the Col3a1 gene
KB Long, Z Li, CM Burgwin, SG Choe, V Martyanov, S Sassi-Gaha, ...
Journal of Investigative Dermatology 135 (3), 718-727, 2015
382015
Differences in genotype and virulence among four multidrug-resistant Streptococcus pneumoniae isolates belonging to the PMEN1 clone
NL Hiller, RA Eutsey, E Powell, JP Earl, B Janto, DP Martin, S Dawid, ...
PLoS One 6 (12), e28850, 2011
352011
Comparative Genomic Analyses of the Moraxella catarrhalis Serosensitive and Seroresistant Lineages Demonstrate Their Independent Evolution
JP Earl, SPW de Vries, A Ahmed, E Powell, MP Schultz, PWM Hermans, ...
Genome Biology and Evolution 8 (4), 955-974, 2016
282016
Nontypeable Haemophilus influenzae Genetic Islands Associated with Chronic Pulmonary Infection
L Zhang, J Xie, M Patel, A Bakhtyar, GD Ehrlich, A Ahmed, J Earl, ...
Public Library of Science 7 (9), e44730, 2012
272012
Genome rearrangements induce biofilm formation in Escherichia coli C – an old model organism with a new application in biofilm research
JE Król, DC Hall, S Balashov, S Pastor, J Sibert, J McCaffrey, S Lang, ...
BMC genomics 20, 1-18, 2019
242019
The bacterial guide to designing a diversified gene portfolio
KA Innamorati, JP Earl, SD Aggarwal, GD Ehrlich, NL Hiller
The pangenome: Diversity, dynamics and evolution of genomes, 51-87, 2020
212020
Design and validation of a supragenome array for determination of the genomic content of Haemophilus influenzae isolates
RA Eutsey, NL Hiller, JP Earl, BA Janto, ME Dahlgren, A Ahmed, E Powell, ...
BMC genomics 14, 1-16, 2013
172013
Virulence potential and genome-wide characterization of drug resistant Streptococcus pneumoniae clones selected in vivo by the 7-valent pneumococcal conjugate vaccine
N Frazão, NL Hiller, E Powell, J Earl, A Ahmed, R Sá-Leão, ...
PloS one 8 (9), e74867, 2013
152013
Whole genome sequencing of Streptomyces actuosus ISP-5337, Streptomyces sioyaensis B-5408, and Actinospica acidiphila B-2296 reveals secondary metabolomes with antibiotic potential
HM Majer, RL Ehrlich, A Ahmed, JP Earl, GD Ehrlich, J Beld
Biotechnology Reports 29, e00596, 2021
142021
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