Patrick Stumpf
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Light modulation of cellular cAMP by a small bacterial photoactivated adenylyl cyclase, bPAC, of the soil bacterium Beggiatoa
M Stierl, P Stumpf, D Udwari, R Gueta, R Hagedorn, A Losi, W Gärtner, ...
Journal of biological chemistry 286 (2), 1181-1188, 2011
Nanog-dependent feedback loops regulate murine embryonic stem cell heterogeneity
BD MacArthur, A Sevilla, M Lenz, FJ Müller, BM Schuldt, AA Schuppert, ...
Nature cell biology 14 (11), 1139-1147, 2012
Stem Cell Differentiation as a Non-Markov Stochastic Process
PS Stumpf, RCG Smith, M Lenz, A Schuppert, FJ Müller, A Babtie, ...
Cell Systems 5 (3), 268-282. e7, 2017
MicroRNA-146a regulates human foetal femur derived skeletal stem cell differentiation by down-regulating SMAD2 and SMAD3
KSC Cheung, N Sposito, PS Stumpf, DI Wilson, T Sanchez-Elsner, ...
PloS one 9 (6), 2014
Thrombopoietin Metabolically Primes Hematopoietic Stem Cells to Megakaryocyte-Lineage Differentiation
A Nakamura-Ishizu, T Matsumura, PS Stumpf, T Umemoto, H Takizawa, ...
Cell reports 25 (7), 1772-1785. e6, 2018
Quantification of intracellular payload release from polymersome nanoparticles
E Scarpa, JL Bailey, AA Janeczek, PS Stumpf, AH Johnston, ROC Oreffo, ...
Scientific Reports 6, 2016
Single-cell analyses and machine learning define hematopoietic progenitor and HSC-like cells derived from human PSCs
A Fidanza, PS Stumpf, P Ramachandran, S Tamagno, A Babtie, ...
Blood 136 (25), 2893-2904, 2020
Nanog fluctuations in embryonic stem cells highlight the problem of measurement in cell biology
RCG Smith, PS Stumpf, SJ Ridden, A Sim, S Filippi, HA Harrington, ...
Biophysical Journal 112 (12), 2641-2652, 2017
Genomic programming of IRF4-expressing human Langerhans cells
S Sirvent, AF Vallejo, J Davies, K Clayton, Z Wu, J Woo, J Riddell, ...
Nature Communications 11 (1), 1-12, 2020
Isolation, Differentiation, and Characterization of Human Bone Marrow Stem Cells In Vitro and In Vivo
J Kanczler, RS Tare, P Stumpf, TJ Noble, C Black, ROC Oreffo
Bone Research Protocols, 53-70, 2019
Transfer learning efficiently maps bone marrow cell types from mouse to human using single-cell RNA sequencing
PS Stumpf, X Du, H Imanishi, Y Kunisaki, Y Semba, T Noble, RCG Smith, ...
Communications Biology 3 (1), 1-11, 2020
Machine learning of hematopoietic stem cell divisions from paired daughter cell expression profiles reveals effects of aging on self-renewal
F Arai, PS Stumpf, YM Ikushima, K Hosokawa, A Roch, MP Lutolf, T Suda, ...
Cell Systems 11 (6), 640-652. e5, 2020
Theory of cell fate
MJ Casey, PS Stumpf, BD MacArthur
Wiley Interdisciplinary Reviews: Systems Biology and Medicine 12 (2), e1471, 2020
Machine learning of stem cell identities from single-cell expression data via regulatory network archetypes
PS Stumpf, BD MacArthur
Frontiers in genetics, 2, 2019
First steps towards the successful surface‐based cultivation of human embryonic stem cells in hanging drop systems
JC Schulz, PS Stumpf, A Katsen‐Globa, A Sachinidis, J Hescheler, ...
Engineering in life sciences 12 (6), 584-587, 2012
Single‐cell pluripotency regulatory networks
PS Stumpf, R Ewing, BD MacArthur
Proteomics 16 (17), 2303-2312, 2016
Heterogeneity and ‘memory’in stem cell populations
PS Stumpf, F Arai, BD MacArthur
Physical Biology 17 (6), 065013, 2020
Single cell transcriptomic analysis indentifies Langerhans cells immunocompetency is critical for IDO1-dependent ability to induce tolerogenic T cells
J Davies, S Sirvent, AF Vallejo, K Clayton, G Porter, P Stumpf, J West, ...
bioRxiv. Cold Spring Harbor Laboratory 20, 2019
Mapping biology from mouse to man using transfer learning
PS Stumpf, D Du, H Imanishi, Y Kunisaki, Y Semba, T Noble, RCG Smith, ...
bioRxiv, 2019
From mathematical modeling and machine learning to clinical reality
BD MacArthur, PS Stumpf, ROC Oreffo
Principles of Tissue Engineering, 37-51, 2020
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