| An integrated encyclopedia of DNA elements in the human genome EP Consortium Nature 489 (7414), 57-74, 2012 | 17045 | 2012 |
| Integrative analysis of 111 reference human epigenomes A Kundaje, W Meuleman, J Ernst, M Bilenky, A Yen, A Heravi-Moussavi, ... Nature 518 (7539), 317-330, 2015 | 6239 | 2015 |
| Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project Management Group Liefer Laura A. 51 Wetterstrand Kris A. 51 Good Peter J. 51 ... nature 447 (7146), 799-816, 2007 | 6012 | 2007 |
| Systematic localization of common disease-associated variation in regulatory DNA MT Maurano, R Humbert, E Rynes, RE Thurman, E Haugen, H Wang, ... Science 337 (6099), 1190-1195, 2012 | 3983 | 2012 |
| The accessible chromatin landscape of the human genome RE Thurman, E Rynes, R Humbert, J Vierstra, MT Maurano, E Haugen, ... Nature 489 (7414), 75-82, 2012 | 3139 | 2012 |
| A comparative encyclopedia of DNA elements in the mouse genome F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ... Nature 515 (7527), 355-364, 2014 | 1960 | 2014 |
| An expansive human regulatory lexicon encoded in transcription factor footprints S Neph, J Vierstra, AB Stergachis, AP Reynolds, E Haugen, B Vernot, ... Nature 489 (7414), 83-90, 2012 | 962 | 2012 |
| BEDOPS: high-performance genomic feature operations S Neph, MS Kuehn, AP Reynolds, E Haugen, RE Thurman, AK Johnson, ... Bioinformatics 28 (14), 1919-1920, 2012 | 952 | 2012 |
| The human mitochondrial transcriptome TR Mercer, S Neph, ME Dinger, J Crawford, MA Smith, AMJ Shearwood, ... Cell 146 (4), 645-658, 2011 | 887 | 2011 |
| Global mapping of protein-DNA interactions in vivo by digital genomic footprinting JR Hesselberth, X Chen, Z Zhang, PJ Sabo, R Sandstrom, AP Reynolds, ... Nature methods 6 (4), 283-289, 2009 | 741 | 2009 |
| A user's guide to the encyclopedia of DNA elements (ENCODE) RM Myers, J Stamatoyannopoulos, M Snyder, I Dunham, RC Hardison, ... PLoS biology 9 (4), 2011 | 677 | 2011 |
| Circuitry and dynamics of human transcription factor regulatory networks S Neph, AB Stergachis, A Reynolds, R Sandstrom, E Borenstein, ... Cell 150 (6), 1274-1286, 2012 | 542 | 2012 |
| Foxp3 exploits a pre-existent enhancer landscape for regulatory T cell lineage specification RM Samstein, A Arvey, SZ Josefowicz, X Peng, A Reynolds, R Sandstrom, ... Cell 151 (1), 153-166, 2012 | 521 | 2012 |
| Genome-Wide Association Study in Asian Populations Identifies Variants in ETS1 and WDFY4 Associated with Systemic Lupus Erythematosus W Yang, N Shen, DQ Ye, Q Liu, Y Zhang, XX Qian, N Hirankarn, D Ying, ... PLoS genetics 6 (2), e1000841, 2010 | 461 | 2010 |
| Identification of 22 candidate structured RNAs in bacteria using the CMfinder comparative genomics pipeline Z Weinberg, JE Barrick, Z Yao, A Roth, JN Kim, J Gore, JX Wang, ER Lee, ... Nucleic acids research 35 (14), 4809-4819, 2007 | 412 | 2007 |
| Developmental fate and cellular maturity encoded in human regulatory DNA landscapes AB Stergachis, S Neph, A Reynolds, R Humbert, B Miller, SL Paige, ... Cell 154 (4), 888-903, 2013 | 388 | 2013 |
| Mapping and dynamics of regulatory DNA and transcription factor networks in A. thaliana AM Sullivan, AA Arsovski, J Lempe, KL Bubb, MT Weirauch, PJ Sabo, ... Cell reports 8 (6), 2015-2030, 2014 | 271 | 2014 |
| Conservation of trans-acting circuitry during mammalian regulatory evolution AB Stergachis, S Neph, R Sandstrom, E Haugen, AP Reynolds, M Zhang, ... Nature 515 (7527), 365-370, 2014 | 246 | 2014 |
| Baylor College of Medicine Human Genome Sequencing Center; Washington University Genome Sequencing Center; Broad Institute; Children’s Hospital Oakland Research Institute.(2007 … E Birney, JA Stamatoyannopoulos, A Dutta, R Guigó, TR Gingeras, ... Nature 447 (7146), 799-816, 2007 | 226 | 2007 |
| DNase I–hypersensitive exons colocalize with promoters and distal regulatory elements TR Mercer, SL Edwards, MB Clark, SJ Neph, H Wang, AB Stergachis, ... Nature genetics 45 (8), 852-859, 2013 | 151 | 2013 |
Andrew B. Stergachis, M.D., Ph.D.Assistant Professor, University of WashingtonVerified email at uw.edu
