Nigam Shah
Nigam Shah
Associate Professor of Medicine, Stanford University
Verified email at - Homepage
TitleCited byYear
The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration
B Smith, M Ashburner, C Rosse, J Bard, W Bug, W Ceusters, LJ Goldberg, ...
Nature biotechnology 25 (11), 1251-1255, 2007
BioPortal: ontologies and integrated data resources at the click of a mouse
NF Noy, NH Shah, PL Whetzel, B Dai, M Dorf, N Griffith, C Jonquet, ...
Nucleic acids research 37 (suppl 2), W170-W173, 2009
The BioPAX community standard for pathway data sharing
E Demir, MP Cary, S Paley, K Fukuda, C Lemer, I Vastrik, G Wu, ...
Nature biotechnology 28 (9), 935, 2010
BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications
PL Whetzel, NF Noy, NH Shah, PR Alexander, C Nyulas, T Tudorache, ...
Nucleic Acids Research 39 (suppl 2), W541, 2011
Comparison of concept recognizers for building the Open Biomedical Annotator
APCMAM Nigam H Shah, Nipun Bhatia, Clement Jonquet, Daniel Rubin
BMC Bioinformatics 10 (S9), S14, 2009
Biomedical ontologies: a functional perspective
DL Rubin, NH Shah, NF Noy
Briefings in bioinformatics 9 (1), 75-90, 2008
Novel data‐mining methodologies for adverse drug event discovery and analysis
R Harpaz, W DuMouchel, NH Shah, D Madigan, P Ryan, C Friedman
Clinical Pharmacology & Therapeutics 91 (6), 1010-1021, 2012
Scalable and accurate deep learning with electronic health records
A Rajkomar, E Oren, K Chen, AM Dai, N Hajaj, M Hardt, PJ Liu, X Liu, ...
NPJ Digital Medicine 1 (1), 18, 2018
Proton pump inhibitor usage and the risk of myocardial infarction in the general population
NH Shah, P LePendu, A Bauer-Mehren, YT Ghebremariam, SV Iyer, ...
PloS one 10 (6), e0124653, 2015
Characterizing the stress/defense transcriptome of Arabidopsis
R Mahalingam, A Gomez-Buitrago, N Eckardt, N Shah, A Guevara-Garcia, ...
Genome Biol 4 (3), R20, 2003
Observational Health Data Sciences and Informatics (OHDSI): opportunities for observational researchers
G Hripcsak, JD Duke, NH Shah, CG Reich, V Huser, MJ Schuemie, ...
Studies in health technology and informatics 216, 574, 2015
Web-scale pharmacovigilance: listening to signals from the crowd
RW White, NP Tatonetti, NH Shah, RB Altman, E Horvitz
Journal of the American Medical Informatics Association 20 (3), 404-408, 2013
The National Center for Biomedical Ontology
MA Musen, NF Noy, NH Shah, CG Chute, MA Storey
Unexpected effect of proton pump inhibitors: elevation of the cardiovascular risk factor asymmetric dimethylarginine
YT Ghebremariam, P LePendu, JC Lee, DA Erlanson, A Slaviero, ...
Circulation 128 (8), 845-853, 2013
A nondegenerate code of deleterious variants in Mendelian loci contributes to complex disease risk
DR Blair, CS Lyttle, JM Mortensen, CF Bearden, AB Jensen, ...
Cell 155 (1), 70-80, 2013
Performance of pharmacovigilance signal‐detection algorithms for the FDA adverse event reporting system
R Harpaz, W DuMouchel, P LePendu, A Bauer‐Mehren, P Ryan, ...
Clinical Pharmacology & Therapeutics 93 (6), 539-546, 2013
System and method for integrating and validating genotypic, phenotypic and medical information into a database according to a standardized ontology
M Rabinowitz, J Sheena, Z Demko, C Clark, N Shah
US Patent App. 11/634,550, 2007
Identification of a Global Gene Expression Signature of B-Chronic Lymphocytic Leukemia
DF Jelinek, RC Tschumper, GA Stolovitzky, SJ Iturria, Y Tu, J Lepre, ...
Molecular Cancer Research 1 (5), 346, 2003
Text mining for adverse drug events: the promise, challenges, and state of the art
R Harpaz, A Callahan, S Tamang, Y Low, D Odgers, S Finlayson, K Jung, ...
Drug safety 37 (10), 777-790, 2014
Combing signals from spontaneous reports and electronic health records for detection of adverse drug reactions
R Harpaz, S Vilar, W DuMouchel, H Salmasian, K Haerian, NH Shah, ...
Journal of the American Medical Informatics Association 20 (3), 413-419, 2012
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Articles 1–20