Elana J Fertig
Elana J Fertig
Associate Professor of Oncology Biostatistics and Bioinformatics, Sidney Kimmel Comprehensive Cancer
Verified email at jhmi.edu - Homepage
Title
Cited by
Cited by
Year
Functional normalization of 450k methylation array data improves replication in large cancer studies
JP Fortin, A Labbe, M Lemire, BW Zanke, TJ Hudson, EJ Fertig, ...
Genome biology 15 (11), 1-17, 2014
5182014
p16 protein expression and human papillomavirus status as prognostic biomarkers of nonoropharyngeal head and neck squamous cell carcinoma
CH Chung, Q Zhang, CS Kong, J Harris, EJ Fertig, PM Harari, D Wang, ...
Journal of clinical oncology 32 (35), 3930, 2014
3252014
sva: Surrogate variable analysis
JT Leek, WE Johnson, HS Parker, EJ Fertig, AE Jaffe, JD Storey, Y Zhang, ...
R package version 3 (0), 882-883, 2019
2662019
Activation of the NOTCH pathway in head and neck cancer
W Sun, DA Gaykalova, MF Ochs, E Mambo, D Arnaoutakis, Y Liu, M Loyo, ...
Cancer research 74 (4), 1091-1104, 2014
2232014
Inferring causal molecular networks: empirical assessment through a community-based effort
SM Hill, LM Heiser, T Cokelaer, M Unger, NK Nesser, DE Carlin, Y Zhang, ...
Nature methods 13 (4), 310-318, 2016
1872016
Single-cell RNA-seq analysis of retinal development identifies NFI factors as regulating mitotic exit and late-born cell specification
BS Clark, GL Stein-O’Brien, F Shiau, GH Cannon, E Davis-Marcisak, ...
Neuron 102 (6), 1111-1126. e5, 2019
1522019
A comparative study of 4D-VAR and a 4D ensemble Kalman filter: Perfect model simulations with Lorenz-96
EJ Fertig, J Harlim, BR Hunt
Tellus A: Dynamic Meteorology and Oceanography 59 (1), 96-100, 2007
1472007
Key tumor suppressor genes inactivated by “greater promoter” methylation and somatic mutations in head and neck cancer
R Guerrero-Preston, C Michailidi, L Marchionni, CR Pickering, ...
Epigenetics 9 (7), 1031-1046, 2014
1302014
Targeted sequencing reveals clonal genetic changes in the progression of early lung neoplasms and paired circulating DNA
E Izumchenko, X Chang, M Brait, E Fertig, LT Kagohara, A Bedi, ...
Nature communications 6 (1), 1-13, 2015
1242015
Breast cancer cells condition lymphatic endothelial cells within pre-metastatic niches to promote metastasis
E Lee, EJ Fertig, K Jin, S Sukumar, NB Pandey, AS Popel
Nature communications 5 (1), 1-16, 2014
1212014
Enter the matrix: factorization uncovers knowledge from omics
GL Stein-O’Brien, R Arora, AC Culhane, AV Favorov, LX Garmire, ...
Trends in Genetics 34 (10), 790-805, 2018
1062018
A phase II study of temsirolimus and erlotinib in patients with recurrent and/or metastatic, platinum-refractory head and neck squamous cell carcinoma
JE Bauman, H Arias-Pulido, SJ Lee, MH Fekrazad, H Ozawa, E Fertig, ...
Oral oncology 49 (5), 461-467, 2013
952013
Decomposing cell identity for transfer learning across cellular measurements, platforms, tissues, and species
GL Stein-O’Brien, BS Clark, T Sherman, C Zibetti, Q Hu, R Sealfon, S Liu, ...
Cell systems 8 (5), 395-411. e8, 2019
732019
Epigenetic regulation of gene expression in cancer: techniques, resources and analysis
LT Kagohara, GL Stein-O’Brien, D Kelley, E Flam, HC Wick, LV Danilova, ...
Briefings in functional genomics 17 (1), 49-63, 2018
712018
CoGAPS: an R/C++ package to identify patterns and biological process activity in transcriptomic data
EJ Fertig, J Ding, AV Favorov, G Parmigiani, MF Ochs
Bioinformatics 26 (21), 2792-2793, 2010
682010
shinyMethyl: interactive quality control of Illumina 450k DNA methylation arrays in R
JP Fortin, E Fertig, K Hansen
F1000Research 3, 2014
672014
The twist box domain is required for Twist1-induced prostate cancer metastasis
RP Gajula, ST Chettiar, RD Williams, S Thiyagarajan, Y Kato, K Aziz, ...
Molecular cancer research 11 (11), 1387-1400, 2013
652013
Inhibition of TGF-β enhances the in vivo antitumor efficacy of EGF receptor–targeted therapy
A Bedi, X Chang, K Noonan, V Pham, R Bedi, EJ Fertig, M Considine, ...
Molecular cancer therapeutics 11 (11), 2429-2439, 2012
642012
Whole-genome sequencing of salivary gland adenoid cystic carcinoma
EM Rettig, CC Talbot, M Sausen, S Jones, JA Bishop, LD Wood, ...
Cancer Prevention Research 9 (4), 265-274, 2016
622016
Preserving biological heterogeneity with a permuted surrogate variable analysis for genomics batch correction
HS Parker, JT Leek, AV Favorov, M Considine, X Xia, S Chavan, ...
Bioinformatics 30 (19), 2757-2763, 2014
602014
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