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Erik Poppleton
Erik Poppleton
Postdoc, Max Planck Institute for Medical Research
Verified email at mr.mpg.de
Title
Cited by
Cited by
Year
Root litter decomposition slows with soil depth
CEH Pries, BN Sulman, C West, C O'Neill, E Poppleton, RC Porras, ...
Soil Biology and Biochemistry 125, 103-114, 2018
1232018
Meta-DNA structures
G Yao, F Zhang, F Wang, T Peng, H Liu, E Poppleton, P Šulc, S Jiang, ...
Nature chemistry 12 (11), 1067-1075, 2020
1122020
Design, optimization, and analysis of large DNA and RNA nanostructures through interactive visualization, editing, and molecular simulation
E Poppleton, J Bohlin, M Matthies, S Sharma, F Zhang, P Šulc
Nucleic Acids Research 48 (12), e72, 2020
1102020
Tacoxdna: A user‐friendly web server for simulations of complex DNA structures, from single strands to origami
A Suma, E Poppleton, M Matthies, P Šulc, F Romano, AA Louis, JPK Doye, ...
Journal of computational chemistry 40 (29), 2586-2595, 2019
702019
OxDNA. org: a public webserver for coarse-grained simulations of DNA and RNA nanostructures
E Poppleton, R Romero, A Mallya, L Rovigatti, P Šulc
Nucleic acids research 49 (W1), W491-W498, 2021
582021
Design and simulation of DNA, RNA and hybrid protein–nucleic acid nanostructures with oxView
J Bohlin, M Matthies, E Poppleton, J Procyk, A Mallya, H Yan, P Šulc
Nature protocols 17 (8), 1762-1788, 2022
462022
Triangulated wireframe structures assembled using single-stranded DNA tiles
M Matthies, NP Agarwal, E Poppleton, FM Joshi, P Sulc, TL Schmidt
Acs Nano 13 (2), 1839-1848, 2019
272019
Coarse-grained nucleic acid–protein model for hybrid nanotechnology
J Procyk, E Poppleton, P Šulc
Soft Matter 17 (13), 3586-3593, 2021
212021
The oxDNA coarse-grained model as a tool to simulate DNA origami
JPK Doye, H Fowler, D Prešern, J Bohlin, L Rovigatti, F Romano, P Šulc, ...
DNA and RNA Origami: Methods and Protocols, 93-112, 2023
202023
Effects of flexibility of the α2 chain of type I collagen on collagenase cleavage
A Mekkat, E Poppleton, B An, R Visse, H Nagase, DL Kaplan, B Brodsky, ...
Journal of structural biology 203 (3), 247-254, 2018
202018
Nanobase. org: a repository for DNA and RNA nanostructures
E Poppleton, A Mallya, S Dey, J Joseph, P Šulc
Nucleic acids research 50 (D1), D246-D252, 2022
182022
Enzymatic phosphorylation of Ser in a type I collagen peptide
Y Qiu, E Poppleton, A Mekkat, H Yu, S Banerjee, SE Wiley, JE Dixon, ...
Biophysical Journal 115 (12), 2327-2335, 2018
172018
oxDNA: coarse-grained simulations of nucleic acids made simple
E Poppleton, M Matthies, D Mandal, F Romano, P Šulc, L Rovigatti
Journal of Open Source Software 8 (81), 4693, 2023
152023
Unified nanotechnology format: one way to store them all
D Kuťák, E Poppleton, H Miao, P Šulc, I Barišić
Molecules 27 (1), 63, 2021
62021
Expertrna: A new framework for RNA secondary structure prediction
M Liu, E Poppleton, G Pedrielli, P Šulc, DP Bertsekas
INFORMS Journal on Computing 34 (5), 2464-2484, 2022
52022
A rhythmically pulsing leaf-spring DNA-origami nanoengine that drives a passive follower
M Centola, E Poppleton, S Ray, M Centola, R Welty, J Valero, NG Walter, ...
Nature nanotechnology, 1-11, 2023
42023
RNA origami: design, simulation and application
E Poppleton, N Urbanek, T Chakraborty, A Griffo, L Monari, K Göpfrich
RNA biology 20 (1), 510-524, 2023
32023
Coarse-Grained Simulations for the Characterization and Optimization of Hybrid Protein–DNA Nanostructures
RP Narayanan, J Procyk, P Nandi, A Prasad, Y Xu, E Poppleton, ...
ACS nano 16 (9), 14086-14096, 2022
32022
DNA-Nanostructure-Guided Assembly of Proteins into Programmable Shapes
Q Lu, Y Xu, E Poppleton, K Zhou, P Sulc, N Stephanopoulos, Y Ke
Nano Letters, 2024
2024
nNxB: a new coarse-grained model for RNA and DNA nanotechnology
FT Guerra, E Poppleton, P Šulc, L Rovigatti
arXiv preprint arXiv:2311.03317, 2023
2023
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