| Anomaly detection for IoT time-series data: A survey AA Cook, G Mısırlı, Z Fan IEEE Internet of Things Journal 7 (7), 6481-6494, 2019 | 706 | 2019 |
| The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology M Galdzicki, KP Clancy, E Oberortner, M Pocock, JY Quinn, CA Rodriguez, ... Nature biotechnology 32 (6), 545-550, 2014 | 330 | 2014 |
| Synthetic biology open language (SBOL) version 2.3 C Madsen, A Goñi Moreno, U P, Z Palchick, N Roehner, C Atallah, ... Journal of integrative bioinformatics 16 (2), 20190025, 2019 | 168* | 2019 |
| SynBioHub: a standards-enabled design repository for synthetic biology JA McLaughlin, CJ Myers, Z Zundel, G Mısırlı, M Zhang, ID Ofiteru, ... ACS synthetic biology 7 (2), 682-688, 2018 | 149 | 2018 |
| Standard virtual biological parts: a repository of modular modeling components for synthetic biology MT Cooling, V Rouilly, G Misirli, J Lawson, T Yu, J Hallinan, A Wipat Bioinformatics 26 (7), 925-931, 2010 | 111 | 2010 |
| Sharing structure and function in biological design with SBOL 2.0 N Roehner, J Beal, K Clancy, B Bartley, G Misirli, R Grunberg, ... ACS synthetic biology 5 (6), 498-506, 2016 | 100 | 2016 |
| Harmonizing semantic annotations for computational models in biology ML Neal, M König, D Nickerson, G Mısırlı, R Kalbasi, A Dräger, K Atalag, ... Briefings in bioinformatics 20 (2), 540-550, 2019 | 73 | 2019 |
| Proteomic analysis of Bacillus subtilis strains engineered for improved production of heterologous proteins S Pohl, G Bhavsar, J Hulme, AE Bloor, G Misirli, MW Leckenby, ... Proteomics 13 (22), 3298-3308, 2013 | 68 | 2013 |
| The synthetic biology open language (SBOL) version 3: simplified data exchange for bioengineering JA McLaughlin, J Beal, G Mısırlı, R Grünberg, BA Bartley, J Scott-Brown, ... Frontiers in Bioengineering and Biotechnology 8, 1009, 2020 | 50 | 2020 |
| A standard-enabled workflow for synthetic biology CJ Myers, J Beal, TE Gorochowski, H Kuwahara, C Madsen, ... Biochemical Society Transactions 45 (3), 793-803, 2017 | 45 | 2017 |
| Model annotation for synthetic biology: automating model to nucleotide sequence conversion G Misirli, JS Hallinan, T Yu, JR Lawson, SM Wimalaratne, MT Cooling, ... Bioinformatics 27 (7), 973-979, 2011 | 41 | 2011 |
| Synthetic biology open language (SBOL) version 3.1. 0 L Buecherl, T Mitchell, J Scott-Brown, P Vaidyanathan, G Vidal, H Baig, ... Journal of integrative bioinformatics 20 (1), 20220058, 2023 | 39* | 2023 |
| A computational workflow for the automated generation of models of genetic designs G Misirli, T Nguyen, JA McLaughlin, P Vaidyanathan, TS Jones, ... ACS synthetic biology 8 (7), 1548-1559, 2018 | 38 | 2018 |
| Data integration and mining for synthetic biology design G Mısırlı, J Hallinan, M Pocock, P Lord, JA McLaughlin, H Sauro, A Wipat ACS synthetic biology 5 (10), 1086-1097, 2016 | 38* | 2016 |
| Synthetic biology open language (SBOL) version 1.1. 0 M Galdzicki, M Wilson, CA Rodriguez, MR Pocock, E Oberortner, L Adam, ... | 38 | 2012 |
| The SBOL stack: a platform for storing, publishing, and sharing synthetic biology designs C Madsen, JA McLaughlin, G Mısırlı, M Pocock, K Flanagan, J Hallinan, ... ACS synthetic biology 5 (6), 487-497, 2016 | 34 | 2016 |
| Proposed data model for the next version of the Synthetic Biology Open Language N Roehner, E Oberortner, M Pocock, J Beal, K Clancy, C Madsen, ... ACS synthetic biology 4 (1), 57-71, 2015 | 34* | 2015 |
| libSBOLj 2.0: a java library to support SBOL 2.0 Z Zhang, T Nguyen, N Roehner, G Misirli, M Pocock, E Oberortner, ... IEEE life sciences letters 1 (4), 34-37, 2015 | 33 | 2015 |
| Composable modular models for synthetic biology G Misirli, J Hallinan, A Wipat ACM Journal on Emerging Technologies in Computing Systems (JETC) 11 (3), 1-19, 2014 | 32 | 2014 |
| VisBOL: web-based tools for synthetic biology design visualization JA McLaughlin, M Pocock, G Mısırlı, C Madsen, A Wipat ACS synthetic biology 5 (8), 874-876, 2016 | 23 | 2016 |
