Goksel Misirli
TitleCited byYear
The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology
M Galdzicki, KP Clancy, E Oberortner, M Pocock, JY Quinn, CA Rodriguez, ...
Nature biotechnology 32 (6), 545, 2014
2092014
Standard virtual biological parts: a repository of modular modeling components for synthetic biology
MT Cooling, V Rouilly, G Misirli, J Lawson, T Yu, J Hallinan, A Wipat
Bioinformatics 26 (7), 925-931, 2010
922010
Sharing structure and function in biological design with SBOL 2.0
N Roehner, J Beal, K Clancy, B Bartley, G Misirli, R Grünberg, ...
ACS synthetic biology 5 (6), 498-506, 2016
462016
Synthetic biology open language (SBOL) version 2.0. 0
B Bartley, J Beal, K Clancy, G Misirli, N Roehner, E Oberortner, M Pocock, ...
Journal of integrative bioinformatics 12 (2), 902-991, 2015
412015
Proteomic analysis of Bacillus subtilis strains engineered for improved production of heterologous proteins
S Pohl, G Bhavsar, J Hulme, AE Bloor, G Misirli, MW Leckenby, ...
Proteomics 13 (22), 3298-3308, 2013
402013
SynBioHub: a standards-enabled design repository for synthetic biology
JA McLaughlin, CJ Myers, Z Zundel, G Mısırlı, M Zhang, ID Ofiteru, ...
ACS synthetic biology 7 (2), 682-688, 2018
352018
Synthetic biology open language (SBOL) version 1.1. 0
M Galdzicki, M Wilson, CA Rodriguez, MR Pocock, E Oberortner, L Adam, ...
332012
Model annotation for synthetic biology: automating model to nucleotide sequence conversion
G Misirli, JS Hallinan, T Yu, JR Lawson, SM Wimalaratne, MT Cooling, ...
Bioinformatics 27 (7), 973-979, 2011
312011
Proposed data model for the next version of the Synthetic Biology Open Language
N Roehner, E Oberortner, M Pocock, J Beal, K Clancy, C Madsen, ...
ACS synthetic biology 4 (1), 57-71, 2014
29*2014
Synthetic biology open language (SBOL) version 2.2. 0
RS Cox, C Madsen, JA McLaughlin, T Nguyen, N Roehner, B Bartley, ...
Journal of integrative bioinformatics 15 (1), 2018
232018
The SBOL Stack: a platform for storing, publishing, and sharing synthetic biology designs
C Madsen, JA McLaughlin, G Mısırlı, M Pocock, K Flanagan, J Hallinan, ...
ACS synthetic biology 5 (6), 487-497, 2016
232016
A standard-enabled workflow for synthetic biology
CJ Myers, J Beal, TE Gorochowski, H Kuwahara, C Madsen, ...
Biochemical Society Transactions 45 (3), 793-803, 2017
222017
libSBOLj 2.0: a java library to support SBOL 2.0
Z Zhang, T Nguyen, N Roehner, G Misirli, M Pocock, E Oberortner, ...
IEEE life sciences letters 1 (4), 34-37, 2015
202015
Composable modular models for synthetic biology
G Misirli, J Hallinan, A Wipat
ACM Journal on Emerging Technologies in Computing Systems (JETC) 11 (3), 22, 2014
202014
Synthetic biology open language (SBOL) version 2.1. 0
J Beal, RS Cox, R Grünberg, J McLaughlin, T Nguyen, B Bartley, M Bissell, ...
Journal of integrative bioinformatics 13 (3), 30-132, 2016
172016
Data integration and mining for synthetic biology design
G Mısırlı, J Hallinan, M Pocock, P Lord, JA McLaughlin, H Sauro, A Wipat
ACS synthetic biology 5 (10), 1086-1097, 2016
16*2016
Annotation of rule-based models with formal semantics to enable creation, analysis, reuse and visualization
G Misirli, M Cavaliere, W Waites, M Pocock, C Madsen, O Gilfellon, ...
Bioinformatics 32 (6), 908-917, 2015
142015
VisBOL: web-based tools for synthetic biology design visualization
JA McLaughlin, M Pocock, G Mısırlı, C Madsen, A Wipat
ACS synthetic biology 5 (8), 874-876, 2016
122016
Harmonizing semantic annotations for computational models in biology
ML Neal, M König, D Nickerson, G Mısırlı, R Kalbasi, A Dräger, K Atalag, ...
Briefings in bioinformatics 20 (2), 540-550, 2018
102018
BacillOndex: An Integrated Data Resource for Systems and Synthetic Biology
G Misirli, A Wipat, J Mullen, K James, M Pocock, W Smith, N Allenby, ...
Journal of Integrative Bioinformatics 10 (2), 224, 2013
102013
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Articles 1–20