Justin P. Shaffer
Title
Cited by
Cited by
Year
An endohyphal bacterium (Chitinophaga, Bacteroidetes) alters carbon source use by Fusarium keratoplasticum (F. solani species complex, Nectriaceae)
JP Shaffer, JM U'Ren, RE Gallery, DA Baltrus, AE Arnold
Frontiers in microbiology 8, 350, 2017
382017
Diversity, specificity, and phylogenetic relationships of endohyphal bacteria in fungi that inhabit tropical seeds and leaves
JP Shaffer, C Sarmiento, PC Zalamea, RE Gallery, AS Davis, DA Baltrus, ...
Frontiers in Ecology and Evolution 4, 116, 2016
222016
Bacterial endosymbionts: master modulators of fungal phenotypes
SJ Araldi-Brondolo, J Spraker, JP Shaffer, EH Woytenko, DA Baltrus, ...
The Fungal Kingdom, 981-1004, 2017
132017
Gut microbiome composition in the Hispanic Community Health Study/Study of Latinos is shaped by geographic relocation, environmental factors, and obesity
RC Kaplan, Z Wang, M Usyk, D Sotres-Alvarez, ML Daviglus, ...
Genome biology 20 (1), 219, 2019
82019
Context-dependent and variable effects of endohyphal bacteria on interactions between fungi and seeds
JP Shaffer, PC Zalamea, C Sarmiento, RE Gallery, JW Dalling, AS Davis, ...
Fungal Ecology 36, 117-127, 2018
42018
Soil-borne fungi influence seed germination and mortality, with implications for coexistence of desert winter annual plants
YM Li, JP Shaffer, B Hall, H Ko
PloS one 14 (10), e0224417, 2019
22019
Ultralow-input single-tube linked-read library method enables short-read second-generation sequencing systems to routinely generate highly accurate and economical long-range …
Z Chen, L Pham, TC Wu, G Mo, Y Xia, PL Chang, D Porter, T Phan, H Che, ...
Genome Research 30 (6), 898-909, 2020
12020
Consumption of Fermented Foods Is Associated with Systematic Differences in the Gut Microbiome and Metabolome
BC Taylor, F Lejzerowicz, M Poirel, JP Shaffer, L Jiang, A Aksenov, ...
Msystems 5 (2), 2020
12020
Ultra-low input single tube linked-read library method enables short-read NGS systems to generate highly accurate and economical long-range sequencing information for de novo …
Z Chen, L Pham, TC Wu, G Mo, Y Xia, P Chang, D Porter, T Phan, H Che, ...
bioRxiv, 852947, 2019
12019
Diversity and evolutionary relationships of bacteria affiliated with tropical seeds and seed-associated fungi
K Garcia, JP Shaffer, C Sarmiento, PC Zalamea, JW Dalling, A Davis, ...
PHYTOPATHOLOGY 103 (6), 48-48, 2013
12013
Germination of Phytophthora ramorum chlamydospores: a comparison of separation method and chlamydospore age
JP Shaffer, JL Parke
In: Frankel, SJ; Kliejunas, JT; Palmieri, KM; Alexander, JM tech. coords …, 2013
12013
Author Correction: Gut microbiome composition in the Hispanic Community Health Study/Study of Latinos is shaped by geographic relocation, environmental factors, and obesity
RC Kaplan, Z Wang, M Usyk, D Sotres-Alvarez, ML Daviglus, ...
Genome biology 21 (1), 1-1, 2020
2020
Consumption of Fermented Plant Foods Is Associated with Systematic Differences in the Human Gut Microbiome and Metabolome
N Litwin, B Taylor, F Lejzerowicz, M Poirel, J Shaffer, L Jiang, A Aksenov, ...
Current Developments in Nutrition 4 (Supplement_2), 1573-1573, 2020
2020
Gut microbiome composition in the Hispanic Community Health Study/Study of Latinos is shaped by geographic relocation, environmental factors, and obesity (vol 20, 219, 2019)
RC Kaplan, Z Wang, M Usyk, D Sotres-Alvarez, ML Daviglus, ...
GENOME BIOLOGY 21 (1), 2020
2020
Feasibility of SARS-CoV-2 virus detection from consumer-grade cotton swabs
JJ Minich, F Ali, C Marotz, P Belda-Ferre, JP Shaffer, CS Carpenter, ...
medRxiv, 2020
2020
Reference data based insights expand understanding of human metabolomes
JM Gauglitz, W Bittremieux, CL Williams, KC Weldon, M Panitchpakdi, ...
BioRxiv, 2020
2020
Colonization of Seeds by Soilborne Fungi: Linking Seed Dormancy-Defense Syndromes, Evolutionary Constraints, and Fungal Traits
SM Stump, C Sarmiento, PC Zalamea, JW Dalling, AS Davis, JP Shaffer, ...
Seed Endophytes, 465-481, 2019
2019
Endohyphal Bacteria of Tropical Plant-Associated Fungi: Diversity, Evolutionary Relationships, and Ecology
JP Shaffer
The University of Arizona, 2017
2017
Phylogenetic relationships and diversity of endohyphal bacteria of plant-associated Pezizomycotina
JP Shaffer, RE Gallery, DA Baltrus, AE Arnold
PHYTOPATHOLOGY 103 (6), 130-131, 2013
2013
Genomic comparison of closely related boreal endophytes
VL Wong, JM U'Ren, J Miadlikowska, JT Monacell, K Arendt, JP Shaffer, ...
PHYTOPATHOLOGY 103 (6), 161-161, 2013
2013
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