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Prakash Raj Timilsena
Prakash Raj Timilsena
Other namesPrakash Raj Timilsina, PR Timilsena, Prakash R Timilsena
Bioinformatics Data Scientist, Boston Children's Hospital
Verified email at childrens.harvard.edu
Title
Cited by
Cited by
Year
Fern genomes elucidate land plant evolution and cyanobacterial symbioses
FW Li, P Brouwer, L Carretero-Paulet, S Cheng, J De Vries, PM Delaux, ...
Nature plants 4 (7), 460-472, 2018
3862018
Convergent horizontal gene transfer and cross-talk of mobile nucleic acids in parasitic plants
Z Yang, EK Wafula, G Kim, S Shahid, JR McNeal, PE Ralph, PR Timilsena, ...
Nature Plants 5 (9), 991-1001, 2019
752019
Identification of senescence-associated genes in broccoli (Brassica oleracea) following harvest
Y Ahlawat, S Li, PR Timilsena, ED Pliakoni, JK Brecht, T Liu
Postharvest Biology and Technology 183, 111729, 2022
132022
A suberized exodermis is required for tomato drought tolerance
A Cantó-Pastor, K Kajala, L Shaar-Moshe, C Manzano, P Timilsena, ...
Nature Plants, 1-13, 2024
102024
Phylogenomic resolution of order-and family-level monocot relationships using 602 single-copy nuclear genes and 1375 BUSCO genes
PR Timilsena, EK Wafula, CF Barrett, S Ayyampalayam, JR McNeal, ...
Frontiers in Plant Science 13, 876779, 2022
102022
Building a foundation for gene family analysis in Rosaceae genomes with a novel workflow: A case study in Pyrus architecture genes
H Zhang, EK Wafula, J Eilers, AE Harkess, PE Ralph, PR Timilsena, ...
Frontiers in Plant Science 13, 975942, 2022
102022
Phylotranscriptomic analyses of mycoheterotrophic monocots show a continuum of convergent evolutionary changes in expressed nuclear genes from three independent …
PR Timilsena, CF Barrett, A Piñeyro-Nelson, EK Wafula, S Ayyampalayam, ...
Genome biology and evolution 15 (1), evac183, 2023
62023
dePamphilis CW (2019) Convergent horizontal gene transfer and cross-talk of mobile nucleic acids in parasitic plants
Z Yang, EK Wafula, G Kim, S Shahid, JR McNeal, PE Ralph, PR Timilsena, ...
Nature Plants 5 (9), 991-1001, 0
6
Convergent horizontal gene transfer and cross-talk of mobile nucleic acids in parasitic plants. Nat Plants 5: 991–1001
Z Yang, EK Wafula, G Kim, S Shahid, JR McNeal, PE Ralph, PR Timilsena, ...
52019
Fern genomes elucidate land plant evolution and cyanobacterial symbioses. Nat Plants 4 (7): 460–472
FW Li, P Brouwer, L Carretero-Paulet, S Cheng, J de Vries, PM Delaux, ...
52018
Cross-species single-cell annotation with orthologous marker gene groups
T Chau, PR Timilsena, SP Bathala, B Bargmann, S Li
12023
A combination of conserved and diverged responses underlies Theobroma cacao’s defense response to Phytophthora palmivora
NP Winters, EK Wafula, BJ Knollenberg, T Hämälä, PR Timilsena, ...
BMC biology 22 (1), 38, 2024
2024
Postharvest Senescence Profiling in Broccoli Using Tandem Mass Tag-based Proteomics
YK Ahlawat, U Ghimire, S Li, P Timilsena, ED Pliakoni, JK Brecht, T Liu
Vegetable Research, 1-12, 2024
2024
Gene Regulatory Network Modeling Using Single-Cell Multi-Omics in Plants
T Chau, P Timilsena, S Li
Plant Gene Regulatory Networks: Methods and Protocols, 259-275, 2023
2023
Cross-species single-cell annotation with orthologous marker gene groups
S Li, T Chau, P Timilsena, S Bathala, B Bargmann
2023
Towards a catalog of pome tree architecture genes: the draft ‘d’Anjou’genome (Pyrus communis L.) 2
LA Honaas
Plant and Animal Genome XXIX Conference (January 8-12, 2022), 2022
2022
Towards a catalog of pome tree architecture genes: the draft ‘d’Anjou’ genome (Pyrus communis L.)
H Zhang, EK Wafula, J Eilers, AE Harkess, PE Ralph, PR Timilsena, ...
bioRxiv, 2021.11. 17.467977, 2021
2021
Phylogenomics and Comparative Transcriptomic Analyses of the Monocots
PR Timilsena
The Pennsylvania State University, 2020
2020
Phylogenetic study of the monocots using many single copy nuclear genes
PR Timilsena, EK Wafula, J Leebens-Mack, CW dePamphilis
Botany, 2016, 2016
2016
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Articles 1–19