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John Marioni
John Marioni
Dirección de correo verificada de gene.com
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RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays
JC Marioni, CE Mason, SM Mane, M Stephens, Y Gilad
Genome research 18 (9), 1509-1517, 2008
35612008
The human cell atlas
A Regev, SA Teichmann, ES Lander, I Amit, C Benoist, E Birney, ...
elife 6, e27041, 2017
22992017
Batch effects in single-cell RNA-sequencing data are corrected by matching mutual nearest neighbors
L Haghverdi, ATL Lun, MD Morgan, JC Marioni
Nature biotechnology 36 (5), 421-427, 2018
20992018
Intratumor heterogeneity in human glioblastoma reflects cancer evolutionary dynamics
A Sottoriva, I Spiteri, SGM Piccirillo, A Touloumis, VP Collins, JC Marioni, ...
Proceedings of the National Academy of Sciences 110 (10), 4009-4014, 2013
20242013
A step-by-step workflow for low-level analysis of single-cell RNA-seq data with Bioconductor
ATL Lun, DJ McCarthy, JC Marioni
F1000Research 5, 2016
16492016
Understanding mechanisms underlying human gene expression variation with RNA sequencing
JK Pickrell, JC Marioni, AA Pai, JF Degner, BE Engelhardt, E Nkadori, ...
Nature 464 (7289), 768-772, 2010
15732010
The technology and biology of single-cell RNA sequencing
AA Kolodziejczyk, JK Kim, V Svensson, JC Marioni, SA Teichmann
Molecular cell 58 (4), 610-620, 2015
14712015
Computational and analytical challenges in single-cell transcriptomics
O Stegle, SA Teichmann, JC Marioni
Nature Reviews Genetics 16 (3), 133-145, 2015
13292015
Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells
F Buettner, KN Natarajan, FP Casale, V Proserpio, A Scialdone, FJ Theis, ...
Nature biotechnology 33 (2), 155-160, 2015
13042015
Resolving the fibrotic niche of human liver cirrhosis at single-cell level
P Ramachandran, R Dobie, JR Wilson-Kanamori, EF Dora, ...
Nature 575 (7783), 512-518, 2019
12942019
Pooling across cells to normalize single-cell RNA sequencing data with many zero counts
AT L. Lun, K Bach, JC Marioni
Genome biology 17, 1-14, 2016
11752016
Eleven grand challenges in single-cell data science
D Lähnemann, J Köster, E Szczurek, DJ McCarthy, SC Hicks, ...
Genome biology 21, 1-35, 2020
11662020
Accounting for technical noise in single-cell RNA-seq experiments
P Brennecke, S Anders, JK Kim, AA Kołodziejczyk, X Zhang, V Proserpio, ...
Nature methods 10 (11), 1093-1095, 2013
10912013
Multi‐Omics Factor Analysis—a framework for unsupervised integration of multi‐omics data sets
R Argelaguet, B Velten, D Arnol, S Dietrich, T Zenz, JC Marioni, F Buettner, ...
Molecular systems biology 14 (6), e8124, 2018
10232018
A single-cell molecular map of mouse gastrulation and early organogenesis
B Pijuan-Sala, JA Griffiths, C Guibentif, TW Hiscock, W Jawaid, ...
Nature 566 (7745), 490-495, 2019
8642019
A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis
TA Down, VK Rakyan, DJ Turner, P Flicek, H Li, E Kulesha, S Graef, ...
Nature biotechnology 26 (7), 779-785, 2008
7932008
EmptyDrops: distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data
ATL Lun, S Riesenfeld, T Andrews, TP Dao, T Gomes, ...
Genome biology 20, 1-9, 2019
7762019
Classification of low quality cells from single-cell RNA-seq data
T Ilicic, JK Kim, AA Kolodziejczyk, FO Bagger, DJ McCarthy, JC Marioni, ...
Genome biology 17, 1-15, 2016
7342016
scNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells
SJ Clark, R Argelaguet, CA Kapourani, TM Stubbs, HJ Lee, ...
Nature communications 9 (1), 781, 2018
6542018
Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data
JF Degner, JC Marioni, AA Pai, JK Pickrell, E Nkadori, Y Gilad, ...
Bioinformatics 25 (24), 3207-3212, 2009
6442009
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Artículos 1–20