Fedor Kouzine
Fedor Kouzine
NCI, NIH
Verified email at mail.nih.gov
TitleCited byYear
The functional response of upstream DNA to dynamic supercoiling in vivo
F Kouzine, S Sanford, Z Elisha-Feil, D Levens
Nature structural & molecular biology 15 (2), 146, 2008
2582008
Transcription-dependent dynamic supercoiling is a short-range genomic force
F Kouzine, A Gupta, L Baranello, D Wojtowicz, K Ben-Aissa, J Liu, ...
Nature structural & molecular biology 20 (3), 396, 2013
1832013
The FUSE/FBP/FIR/TFIIH system is a molecular machine programming a pulse of c‐myc expression
J Liu, F Kouzine, Z Nie, HJ Chung, Z Elisha‐Feil, A Weber, K Zhao, ...
The EMBO journal 25 (10), 2119-2130, 2006
1362006
The dynamic response of upstream DNA to transcription-generated torsional stress
F Kouzine, J Liu, S Sanford, HJ Chung, D Levens
Nature structural & molecular biology 11 (11), 1092-1100, 2004
1292004
Global regulation of promoter melting in naive lymphocytes
F Kouzine, D Wojtowicz, A Yamane, W Resch, KR Kieffer-Kwon, R Bandle, ...
Cell 153 (5), 988-999, 2013
1092013
RNA polymerase II regulates topoisomerase 1 activity to favor efficient transcription
L Baranello, D Wojtowicz, K Cui, BN Devaiah, HJ Chung, KY Chan-Salis, ...
Cell 165 (2), 357-371, 2016
1012016
Supercoil-driven DNA structures regulate genetic transactions
F Kouzine, D Levens
Front Biosci 12 (8-12), 4409, 2007
892007
The importance of being supercoiled: How DNA mechanics regulate dynamic processes
L Baranello, D Levens, A Gupta, F Kouzine
Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms 1819 (7), 632-638, 2012
782012
Permanganate/S1 nuclease footprinting reveals non-B DNA structures with regulatory potential across a mammalian genome
F Kouzine, D Wojtowicz, L Baranello, A Yamane, S Nelson, W Resch, ...
Cell systems 4 (3), 344-356. e7, 2017
552017
Genome scale patterns of supercoiling in a bacterial chromosome
A Lal, A Dhar, A Trostel, F Kouzine, ASN Seshasayee, S Adhya
Nature communications 7 (1), 1-8, 2016
512016
DNA topology and transcription
F Kouzine, D Levens, L Baranello
Nucleus 5 (3), 195-202, 2014
382014
Hierarchical mechanisms build the DNA-binding specificity of FUSE binding protein
LR Benjamin, HJ Chung, S Sanford, F Kouzine, J Liu, D Levens
Proceedings of the National Academy of Sciences 105 (47), 18296-18301, 2008
382008
ChIP bias as a function of cross-linking time
L Baranello, F Kouzine, S Sanford, D Levens
Chromosome research 24 (2), 175-181, 2016
362016
DNA break mapping reveals topoisomerase II activity genome-wide
L Baranello, F Kouzine, D Wojtowicz, K Cui, TM Przytycka, K Zhao, ...
International journal of molecular sciences 15 (7), 13111-13122, 2014
352014
DNA Topoisomerases: Beyond the standard role
L Baranello, F Kouzine, D Levens
Transcription 4 (5), 232-237, 2013
272013
CTCF and cohesin cooperate to organize the 3D structure of the mammalian genome
L Baranello, F Kouzine, D Levens
Proceedings of the National Academy of Sciences 111 (3), 889-890, 2014
162014
Visualizing structure-mediated interactions in supercoiled DNA molecules
S Scott, ZM Xu, F Kouzine, DJ Berard, C Shaheen, B Gravel, L Saunders, ...
Nucleic acids research 46 (9), 4622-4631, 2018
132018
Controlling gene expression by DNA mechanics: emerging insights and challenges
D Levens, L Baranello, F Kouzine
Biophysical reviews 8 (3), 259-268, 2016
122016
Single-molecule visualization of the effects of ionic strength and crowding on structure-mediated interactions in supercoiled DNA molecules
S Scott, C Shaheen, B McGuinness, K Metera, F Kouzine, D Levens, ...
Nucleic acids research 47 (12), 6360-6368, 2019
22019
DNA supercoiling (omics)
L Baranello, D Levens, F Kouzine
Nuclear Architecture and Dynamics, 81-99, 2018
22018
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Articles 1–20