Ville Mustonen

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Christopher IllingworthMRC-University of Glasgow Centre for Virus ResearchVerified email at cam.ac.uk
Jonas WarringerUniversity of GothenburgVerified email at cmb.gu.se
Leopold PartsFaculty at Wellcome Sanger Institute; Senior Researcher (part-time) at University of TartuVerified email at sanger.ac.uk
Gianni LitiIRCAN, CNRS, INSERM, Université Côte d'Azur, University of NiceVerified email at unice.fr
Andrej FischerWellcome Trust Sanger InstituteVerified email at sanger.ac.uk
Francisco SalinasUniversidad Austral de ChileVerified email at uach.cl
Johannes CairnsUniversity of Turku, University of HelsinkiVerified email at helsinki.fi
Ignacio Vázquez-GarcíaMemorial Sloan Kettering Cancer Center | Columbia UniversityVerified email at mskcc.org
Richard DurbinDept of Genetics, University of CambridgeVerified email at cam.ac.uk
Anne FarewellUniversity of GothenburgVerified email at cmb.gu.se
Stephan SchiffelsMax Planck Institute for the Science of Human HistoryVerified email at shh.mpg.de
A. Jamie WoodUniversity of YorkVerified email at york.ac.uk
Douglas Abrahamtheoretical physics university of oxfordVerified email at physics.ox.ac.uk
Qingli GuoThe Institute of Cancer ResearchVerified email at icr.ac.uk
Aleksandra WalczakLaboratoire de physique théorique, École normale supérieureVerified email at lpt.ens.fr
Teppo HiltunenUniversity of TurkuVerified email at utu.fi
Justin B. KinneyAssociate Professor, Simons Center for Quantitative Biology, Cold Spring Harbor LaboratoryVerified email at cshl.edu
Trevor A GrahamDirector, Centre for Evolution and Cancer, ICR, LondonVerified email at icr.ac.uk
Lutz BecksUniversity of KonstanzVerified email at uni-konstanz.de
Armita NourmohammadAssociate Professor, University of WashingtonVerified email at uw.edu

Ville Mustonen

University of Helsinki

Verified email at helsinki.fi - Homepage

Bioinformatics Computational Biology Evolution #UnivHelsinkiCS


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The repertoire of mutational signatures in human cancer LB Alexandrov, J Kim, NJ Haradhvala, MN Huang, AW Tian Ng, Y Wu, ... Nature 578 (7793), 94-101, 2020	2823	2020
Landscape of somatic mutations in 560 breast cancer whole-genome sequences S Nik-Zainal, H Davies, J Staaf, M Ramakrishna, D Glodzik, X Zou, ... Nature 534 (7605), 47-54, 2016	2274	2016
Pan-cancer analysis of whole genomes Nature 578 (7793), 82-93, 2020	1883*	2020
Somatic SF3B1 Mutation in Myelodysplasia with Ring Sideroblasts E Papaemmanuil, M Cazzola, J Boultwood, L Malcovati, P Vyas, D Bowen, ... New England Journal of Medicine 365 (15), 1384-1395, 2011	1458	2011
Exome sequencing identifies frequent mutation of the SWI/SNF complex gene PBRM1 in renal carcinoma I Varela, P Tarpey, K Raine, D Huang, CK Ong, P Stephens, H Davies, ... Nature 469 (7331), 539-542, 2011	1419	2011
The evolutionary history of 2,658 cancers M Gerstung, C Jolly, I Leshchiner, SC Dentro, S Gonzalez, D Rosebrock, ... Nature 578 (7793), 122-128, 2020	942	2020
Pathway and network analysis of cancer genomes Nature methods 12 (7), 615-621, 2015	381	2015
Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes SC Dentro, I Leshchiner, K Haase, M Tarabichi, J Wintersinger, ... Cell 184 (8), 2239-2254. e39, 2021	336	2021
A high-definition view of functional genetic variation from natural yeast genomes A Bergström, JT Simpson, F Salinas, B Barré, L Parts, A Zia, ... Molecular biology and evolution 31 (4), 872-888, 2014	317	2014
Predicting evolution M Lässig, V Mustonen, AM Walczak Nature ecology & evolution 1 (3), 0077, 2017	304	2017
From fitness landscapes to seascapes: non-equilibrium dynamics of selection and adaptation V Mustonen, M Lässig Trends in Genetics 25 (3), 111-119, 2009	278	2009
Fitness flux and ubiquity of adaptive evolution V Mustonen, M Lässig Proceedings of the National Academy of Sciences 107 (9), 4248, 2010	202	2010
High-definition reconstruction of clonal composition in cancer A Fischer, I Vázquez-García, CJR Illingworth, V Mustonen Cell reports 7 (5), 1740-1752, 2014	194	2014
Prediction of antibiotic resistance in Escherichia coli from large-scale pan-genome data D Moradigaravand, M Palm, A Farewell, V Mustonen, J Warringer, L Parts PLoS computational biology 14 (12), e1006258, 2018	190	2018
Computational approaches to identify functional genetic variants in cancer genomes Nature methods 10 (8), 723-729, 2013	187	2013
Evolutionary population genetics of promoters: Predicting binding sites and functional phylogenies V Mustonen, M Lässig Proceedings of the National Academy of Sciences of the United States of …, 2005	149	2005
High-resolution mapping of complex traits with a four-parent advanced intercross yeast population FA Cubillos, L Parts, F Salinas, A Bergström, E Scovacricchi, A Zia, ... Genetics 195 (3), 1141-1155, 2013	138	2013
Energy-dependent fitness: A quantitative model for the evolution of yeast transcription factor binding sites V Mustonen, J Kinney, CG Callan, M Lässig Proceedings of the National Academy of Sciences 105 (34), 12376, 2008	138	2008
EMu: probabilistic inference of mutational processes and their localization in the cancer genome A Fischer, CJR Illingworth, PJ Campbell, V Mustonen Genome biology 14, 1-10, 2013	137	2013
Emergent Neutrality in Adaptive Asexual Evolution S Schiffels, G Szöllösi, V Mustonen, M Lässig Genetics, 2011	129	2011

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