Alexie Papanicolaou

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	All	Since 2015
Citations	7784	6680
h-index	25	20
i10-index	27	26

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200820092010201120122013201420152016201720182019202038 63 85 72 123 259 375 686 900 1138 1243 1337 1373

Co-authors

Chris D. JigginsUniversity of Cambridge and Smithsonian Tropical Research Institute, PanamaVerified email at zoo.cam.ac.uk
W. Owen McMillanSmithsonian Tropical Research InstituteVerified email at si.edu
Moran YassourThe Hebrew University of JerusalemVerified email at mail.huji.ac.il
Joshua OrvisInstitute for Genome Sciences & Johns HopkinsVerified email at som.umaryland.edu
Nir FriedmanProfessor of Computer Science and Life Sciences, Hebrew UniversityVerified email at mail.huji.ac.il
Richard LeDucDirector of Computational Proteomics, Proteomics Center of Excellence, Northwestern UniversityVerified email at northwestern.edu
Matthew MacManesUniversity of New HampshireVerified email at unh.edu
Colin DeweyProfessor of Biostatistics and Medical Informatics, University of Wisconsin-MadisonVerified email at biostat.wisc.edu
Bo LiAssistant Professor of Medicine, Harvard Medical SchoolVerified email at mgh.harvard.edu
David Andrew EcclesBioinformatics Research Analyst, Gringene BioinformaticsVerified email at gringene.org
Joshua C BowdenCSIROVerified email at csiro.au
Francesco StrozziEnterome BioscienceVerified email at enterome.com
Manfred GrabherrSenior Researcher and Team Leader, Uppsala UniversityVerified email at imbim.uu.se
Brian HaasBroad InstituteVerified email at broadinstitute.org
Matthew Brian CougerBrigham and Women's Hospital / Harvard Medical SchoolVerified email at bwh.harvard.edu
Robert HenschelIndiana University, Technische Universität Dresden, Technical University Dresden, Dresden University of TechnologyVerified email at iu.edu
Nathalie PochetAssistant Professor, BWH/HMS/BroadVerified email at broadinstitute.org
Alisha AndersonPrinciple REsearch Scientist, CSIROVerified email at csiro.au
Wei XuLecturer in Entomology, Murdoch UniversityVerified email at Murdoch.edu.au
Mathieu JoronCNRS, Centre d'Ecologie Fonctionnelle et Evolutive, Université de MontpellierVerified email at cefe.cnrs.fr

Alexie Papanicolaou

Senior Lecturer/Assistant Professor, Hawkesbury Institute for the Environment, Western Sydney

Verified email at westernsydney.edu.au - Homepage

genomics entomology bioinformatics


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De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis BJ Haas, A Papanicolaou, M Yassour, M Grabherr, PD Blood, J Bowden, ... Nature protocols 8 (8), 1494-1512, 2013	4478	2013
Butterfly genome reveals promiscuous exchange of mimicry adaptations among species KK Dasmahapatra, JR Walters, AD Briscoe, JW Davey, A Whibley, ... Nature 487 (7405), 94, 2012	913	2012
RNA interference in Lepidoptera: an overview of successful and unsuccessful studies and implications for experimental design O Terenius, A Papanicolaou, JS Garbutt, I Eleftherianos, H Huvenne, ... Journal of insect physiology 57 (2), 231-245, 2011	603	2011
The i5K Initiative: advancing arthropod genomics for knowledge, human health, agriculture, and the environment i5K Consortium Journal of Heredity 104 (5), 595-600, 2013	243	2013
Heliconius wing patterns: an evo-devo model for understanding phenotypic diversity M Joron, CD Jiggins, A Papanicolaou, WO McMillan Heredity 97 (3), 157-167, 2006	123	2006
Genomic innovations, transcriptional plasticity and gene loss underlying the evolution and divergence of two highly polyphagous and invasive Helicoverpa pest species SL Pearce, DF Clarke, PD East, S Elfekih, KHJ Gordon, LS Jermiin, ... BMC biology 15 (1), 1-30, 2017	121	2017
Complex modular architecture around a simple toolkit of wing pattern genes SM Van Belleghem, P Rastas, A Papanicolaou, SH Martin, CF Arias, ... Nature Ecology & Evolution 1 (3), 1-12, 2017	115	2017
Synteny and chromosome evolution in the Lepidoptera: evidence from mapping in Heliconius melpomene EG Pringle, SW Baxter, CL Webster, A Papanicolaou, SF Lee, CD Jiggins Genetics 177 (1), 417-426, 2007	114	2007
Multifaceted biological insights from a draft genome sequence of the tobacco hornworm moth, Manduca sexta MR Kanost, EL Arrese, X Cao, YR Chen, S Chellapilla, MR Goldsmith, ... Insect biochemistry and molecular biology 76, 118-147, 2016	108	2016
The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species A Papanicolaou, MF Schetelig, P Arensburger, PW Atkinson, JB Benoit, ... Genome biology 17 (1), 1-31, 2016	93	2016
Characterization of a hotspot for mimicry: assembly of a butterfly wing transcriptome to genomic sequence at the HmYb/Sb locus L Ferguson, SF Lee, N Chamberlain, N Nadeau, M Joron, S Baxter, ... Molecular ecology 19, 240-254, 2010	90	2010
ButterflyBase: a platform for lepidopteran genomics A Papanicolaou, S Gebauer-Jung, ML Blaxter, W Owen McMillan, ... Nucleic Acids Research 36 (suppl_1), D582-D587, 2007	88	2007
Next generation transcriptomes for next generation genomes using est2assembly A Papanicolaou, R Stierli, DG Heckel BMC bioinformatics 10 (1), 1-16, 2009	75	2009
Blue: correcting sequencing errors using consensus and context P Greenfield, K Duesing, A Papanicolaou, DC Bauer Bioinformatics 30 (19), 2723-2732, 2014	67	2014
Identification and characterization of three chemosensory receptor families in the cotton bollworm Helicoverpa armigera NY Liu, W Xu, A Papanicolaou, SL Dong, A Anderson Bmc Genomics 15 (1), 1-13, 2014	66	2014
Butterfly genomics eclosing P Beldade, WO McMillan, A Papanicolaou Heredity 100 (2), 150-157, 2008	56	2008
Transcriptome analysis reveals novel patterning and pigmentation genes underlying Heliconius butterfly wing pattern variation HM Hines, R Papa, M Ruiz, A Papanicolaou, C Wang, HF Nijhout, ... BMC genomics 13 (1), 288, 2012	53	2012
Expansion of a bitter taste receptor family in a polyphagous insect herbivore W Xu, A Papanicolaou, HJ Zhang, A Anderson Scientific Reports 6, 23666, 2016	47	2016
Genomic tools and cDNA derived markers for butterflies A Papanicolaou, M Joron, WO Mcmillan, ML Blaxter, CD Jiggins Molecular Ecology 14 (9), 2883-2897, 2005	44	2005
Genomewide transcriptional signatures of migratory flight activity in a globally invasive insect pest CM Jones, A Papanicolaou, GK Mironidis, J Vontas, Y Yang, KS Lim, ... Molecular ecology 24 (19), 4901-4911, 2015	41	2015

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