Thomas E. Gorochowski
Thomas E. Gorochowski
Royal Society University Research Fellow, University of Bristol
Verified email at bristol.ac.uk - Homepage
Title
Cited by
Cited by
Year
Synchronization and control of complex networks via contraction, adaptation and evolution
P DeLellis, M Di Bernardo, TE Gorochowski, G Russo
IEEE Circuits and Systems Magazine 10 (3), 64-82, 2010
1242010
Burden-driven feedback control of gene expression
F Ceroni, A Boo, S Furini, TE Gorochowski, O Borkowski, YN Ladak, ...
Nature Methods 15 (5), 387, 2018
992018
Trade-offs between tRNA abundance and mRNA secondary structure support smoothing of translation elongation rate
TE Gorochowski, Z Ignatova, RAL Bovenberg, JA Roubos
Nucleic Acids Research 43 (6), 3022-3032, 2015
872015
BSim: An Agent-Based Tool for Modeling Bacterial Populations in Systems and Synthetic Biology
TE Gorochowski, A Matyjaszkiewicz, T Todd, N Oak, K Kowalska, S Reid, ...
PloS one 7 (8), e42790, 2012
872012
Evolving enhanced topologies for the synchronization of dynamical complex networks
TE Gorochowski, M di Bernardo, CS Grierson
Physical Review E 81 (5), 056212, 2010
642010
A minimal model of ribosome allocation dynamics captures trade-offs in expression between endogenous and synthetic genes
TE Gorochowski, I Avcilar-Kucukgoze, RAL Bovenberg, JA Roubos, ...
ACS Synthetic Biology, 2016
602016
How Behaviour and the Environment Influence Transmission in Mobile Groups
TE Gorochowski, TO Richardson
Temporal Network Epidemiology, 17-42, 2017
44*2017
Agent-based modelling in synthetic biology
TE Gorochowski
Essays in Biochemistry 60 (4), 325-336, 2016
412016
Evolving dynamical networks: A formalism for describing complex systems
TE Gorochowski, MD Bernardo, CS Grierson
Complexity 17 (3), 18-25, 2011
392011
Synthetic Biology Open Language Visual (SBOL Visual) Version 2.0
RS Cox, C Madsen, J McLaughlin, T Nguyen, N Roehner, B Bartley, ...
Journal of Integrative Bioinformatics, 2018
38*2018
Translational sensitivity of the Escherichia coli genome to fluctuating tRNA availability
SE Wohlgemuth, TE Gorochowski, JA Roubos
Nucleic Acids Research 41 (17), 8021-8033, 2013
332013
Memory and combinatorial logic based on DNA inversions: Dynamics and evolutionary stability
J Fernandez-Rodriguez, L Yang, TE Gorochowski, DB Gordon, CA Voigt
ACS Synthetic Biology 4 (12), 1361-1372, 2015
312015
Beyond contact-based transmission networks: the role of spatial coincidence
TO Richardson, TE Gorochowski
Journal of The Royal Society Interface 12 (111), 20150705, 2015
302015
Genetic circuit characterization and debugging using RNA‐seq
TE Gorochowski, A Espah Borujeni, Y Park, AAK Nielsen, J Zhang, ...
Molecular systems biology 13 (11), 952, 2017
282017
A standard-enabled workflow for synthetic biology
CJ Myers, J Beal, TE Gorochowski, H Kuwahara, C Madsen, ...
Biochemical Society Transactions 45 (3), 793-803, 2017
282017
Using Aging to Visually Uncover Evolutionary Processes on Networks
T Gorochowski, M di Bernardo, C Grierson
Visualization and Computer Graphics, IEEE Transactions on 18 (8), 1343-1352, 2012
272012
Using synthetic biological parts and microbioreactors to explore the protein expression characteristics of Escherichia coli
TE Gorochowski, E van den Berg, R Kerkman, JA Roubos, ...
ACS Synthetic Biology 3 (3), 129-139, 2014
262014
DNAplotlib: programmable visualization of genetic designs and associated data
BS Der, E Glassey, BA Bartley, C Enghuus, DB Goodman, DB Gordon, ...
ACS Synthetic Biology 6 (7), 1115-1119, 2016
252016
Registry in a tube: multiplexed pools of retrievable parts for genetic design space exploration
LBA Woodruff, TE Gorochowski, N Roehner, TS Mikkelsen, D Densmore, ...
Nucleic Acids Research 45 (3), 1553-1565, 2016
202016
Organization of feed-forward loop motifs reveals architectural principles in natural and engineered networks
TE Gorochowski, CS Grierson, M di Bernardo
Science Advances 4 (3), eaap9751, 2018
182018
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Articles 1–20