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Thomas E. Gorochowski
Thomas E. Gorochowski
Royal Society University Research Fellow, University of Bristol
Verified email at bristol.ac.uk - Homepage
Title
Cited by
Cited by
Year
Burden-driven feedback control of gene expression
F Ceroni, A Boo, S Furini, TE Gorochowski, O Borkowski, YN Ladak, ...
Nature Methods 15 (5), 387, 2018
2242018
Synchronization and control of complex networks via contraction, adaptation and evolution
P DeLellis, M Di Bernardo, TE Gorochowski, G Russo
IEEE Circuits and Systems Magazine 10 (3), 64-82, 2010
1322010
Trade-offs between tRNA abundance and mRNA secondary structure support smoothing of translation elongation rate
TE Gorochowski, Z Ignatova, RAL Bovenberg, JA Roubos
Nucleic Acids Research 43 (6), 3022-3032, 2015
1162015
BSim: an agent-based tool for modeling bacterial populations in systems and synthetic biology
TE Gorochowski, A Matyjaszkiewicz, T Todd, N Oak, K Kowalska, S Reid, ...
PloS one 7 (8), e42790, 2012
1112012
A minimal model of ribosome allocation dynamics captures trade-offs in expression between endogenous and synthetic genes
TE Gorochowski, I Avcilar-Kucukgoze, RAL Bovenberg, JA Roubos, ...
ACS Synthetic Biology, 2016
952016
Agent-based modelling in synthetic biology
TE Gorochowski
Essays in Biochemistry 60 (4), 325-336, 2016
762016
Pathways to cellular supremacy in biocomputing
L Grozinger, M Amos, TE Gorochowski, P Carbonell, DA Oyarzún, R Stoof, ...
Nature Communications 10 (1), 1-11, 2019
692019
Evolving enhanced topologies for the synchronization of dynamical complex networks
TE Gorochowski, M di Bernardo, CS Grierson
Physical Review E 81 (5), 056212, 2010
652010
Genetic circuit characterization and debugging using RNA‐seq
TE Gorochowski, A Espah Borujeni, Y Park, AAK Nielsen, J Zhang, ...
Molecular Systems Biology 13 (11), 952, 2017
642017
DNAplotlib: programmable visualization of genetic designs and associated data
BS Der, E Glassey, BA Bartley, C Enghuus, DB Goodman, DB Gordon, ...
ACS Synthetic Biology 6 (7), 1115-1119, 2016
552016
Absolute quantification of translational regulation and burden using combined sequencing approaches
TE Gorochowski, I Chelysheva, M Eriksen, P Nair, S Pedersen, Z Ignatova
Molecular Systems Biology 15 (5), e8719, 2019
502019
Translational sensitivity of the Escherichia coli genome to fluctuating tRNA availability
SE Wohlgemuth, TE Gorochowski, JA Roubos
Nucleic Acids Research 41 (17), 8021-8033, 2013
442013
Memory and combinatorial logic based on DNA inversions: Dynamics and evolutionary stability
J Fernandez-Rodriguez, L Yang, TE Gorochowski, DB Gordon, CA Voigt
ACS Synthetic Biology 4 (12), 1361-1372, 2015
422015
Evolving dynamical networks: a formalism for describing complex systems
TE Gorochowski, MD Bernardo, CS Grierson
Complexity 17 (3), 18-25, 2011
422011
A standard-enabled workflow for synthetic biology
CJ Myers, J Beal, TE Gorochowski, H Kuwahara, C Madsen, ...
Biochemical Society Transactions 45 (3), 793-803, 2017
412017
Registry in a tube: multiplexed pools of retrievable parts for genetic design space exploration
LBA Woodruff, TE Gorochowski, N Roehner, TS Mikkelsen, D Densmore, ...
Nucleic Acids Research 45 (3), 1553-1565, 2016
412016
Beyond contact-based transmission networks: the role of spatial coincidence
TO Richardson, TE Gorochowski
Journal of The Royal Society Interface 12 (111), 20150705, 2015
392015
Using aging to visually uncover evolutionary processes on networks
T Gorochowski, M di Bernardo, C Grierson
Visualization and Computer Graphics, IEEE Transactions on 18 (8), 1343-1352, 2012
392012
Using synthetic biological parts and microbioreactors to explore the protein expression characteristics of Escherichia coli
TE Gorochowski, E van den Berg, R Kerkman, JA Roubos, ...
ACS Synthetic Biology 3 (3), 129-139, 2014
362014
Organization of feed-forward loop motifs reveals architectural principles in natural and engineered networks
TE Gorochowski, CS Grierson, M di Bernardo
Science Advances 4 (3), eaap9751, 2018
352018
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