| Value of using multiple proteases for large-scale mass spectrometry-based proteomics DL Swaney, CD Wenger, JJ Coon Journal of proteome research 9 (3), 1323-1329, 2010 | 539 | 2010 |
| A dynamic model of proteome changes reveals new roles for transcript alteration in yeast MV Lee, SE Topper, SL Hubler, J Hose, CD Wenger, JJ Coon, AP Gasch Molecular systems biology 7 (1), 514, 2011 | 329 | 2011 |
| Proteomic and phosphoproteomic comparison of human ES and iPS cells DH Phanstiel, J Brumbaugh, CD Wenger, S Tian, MD Probasco, DJ Bailey, ... Nature methods 8 (10), 821-827, 2011 | 314 | 2011 |
| Gas-phase purification enables accurate, multiplexed proteome quantification with isobaric tagging CD Wenger, MV Lee, AS Hebert, GC McAlister, DH Phanstiel, ... Nature methods 8 (11), 933-935, 2011 | 282 | 2011 |
| Human embryonic stem cell phosphoproteome revealed by electron transfer dissociation tandem mass spectrometry DL Swaney, CD Wenger, JA Thomson, JJ Coon Proceedings of the National Academy of Sciences 106 (4), 995-1000, 2009 | 223 | 2009 |
| Phosphoproteomics for the masses PA Grimsrud, DL Swaney, CD Wenger, NA Beauchene, JJ Coon ACS chemical biology 5 (1), 105-119, 2010 | 211 | 2010 |
| COMPASS: A suite of pre‐and post‐search proteomics software tools for OMSSA CD Wenger, DH Phanstiel, MV Lee, DJ Bailey, JJ Coon Proteomics 11 (6), 1064-1074, 2011 | 188 | 2011 |
| A proteomics search algorithm specifically designed for high-resolution tandem mass spectra CD Wenger, JJ Coon Journal of proteome research 12 (3), 1377-1386, 2013 | 179 | 2013 |
| Top-down proteomics on a chromatographic time scale using linear ion trap Fourier transform hybrid mass spectrometers BA Parks, L Jiang, PM Thomas, CD Wenger, MJ Roth, MT Boyne, ... Analytical chemistry 79 (21), 7984-7991, 2007 | 153 | 2007 |
| Large-Scale Phosphoprotein Analysis in Medicago truncatula Roots Provides Insight into in Vivo Kinase Activity in Legumes PA Grimsrud, D den Os, CD Wenger, DL Swaney, D Schwartz, ... Plant physiology 152 (1), 19-28, 2010 | 147 | 2010 |
| RNA–protein analysis using a conditional CRISPR nuclease HY Lee, RE Haurwitz, A Apffel, K Zhou, B Smart, CD Wenger, S Laderman, ... Proceedings of the National Academy of Sciences 110 (14), 5416-5421, 2013 | 91 | 2013 |
| Global post-translational modification discovery Q Li, MR Shortreed, CD Wenger, BL Frey, LV Schaffer, M Scalf, LM Smith Journal of proteome research 16 (4), 1383-1390, 2017 | 85 | 2017 |
| Post-acquisition ETD spectral processing for increased peptide identifications DM Good, CD Wenger, GC McAlister, DL Bai, DF Hunt, JJ Coon Journal of the American Society for Mass Spectrometry 20, 1435-1440, 2009 | 79 | 2009 |
| Amine-reactive neutron-encoded labels for highly plexed proteomic quantitation AS Hebert, AE Merrill, JA Stefely, DJ Bailey, CD Wenger, MS Westphall, ... Molecular & Cellular Proteomics 12 (11), 3360-3369, 2013 | 73 | 2013 |
| Tandem mass spectrometry with ultrahigh mass accuracy clarifies peptide identification by database retrieval MT Boyne, BA Garcia, M Li, L Zamdborg, CD Wenger, S Babai, ... Journal of proteome research 8 (1), 374-379, 2009 | 73 | 2009 |
| Global identification of protein post-translational modifications in a single-pass database search MR Shortreed, CD Wenger, BL Frey, GM Sheynkman, M Scalf, MP Keller, ... Journal of proteome research 14 (11), 4714-4720, 2015 | 62 | 2015 |
| Instant spectral assignment for advanced decision tree-driven mass spectrometry DJ Bailey, CM Rose, GC McAlister, J Brumbaugh, P Yu, CD Wenger, ... Proceedings of the National Academy of Sciences 109 (22), 8411-8416, 2012 | 62 | 2012 |
| Analysis of tandem mass spectra by FTMS for improved large-scale proteomics with superior protein quantification GC McAlister, D Phanstiel, CD Wenger, MV Lee, JJ Coon Analytical chemistry 82 (1), 316-322, 2010 | 59 | 2010 |
| Plotgardener: cultivating precise multi-panel figures in R NE Kramer, ES Davis, CD Wenger, EM Deoudes, SM Parker, MI Love, ... Bioinformatics 38 (7), 2042-2045, 2022 | 54 | 2022 |
| Characterization of Proteomic and Metabolomic Responses to Dietary Factors and Supplements1 J Astle, JT Ferguson, JB German, GG Harrigan, NL Kelleher, T Kodadek, ... The Journal of nutrition 137 (12), 2787-2793, 2007 | 49 | 2007 |
Joshua J. CoonProfessor of Chemistry and Biomolecular Chemistry, U. Of WisconsinVerified email at chem.wisc.edu
