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| The BioPAX community standard for pathway data sharing E Demir, MP Cary, S Paley, K Fukuda, C Lemer, I Vastrik, G Wu, ... Nature biotechnology 28 (9), 935, 2010 | 540 | 2010 |
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| The EBI RDF platform: linked open data for the life sciences S Jupp, J Malone, J Bolleman, M Brandizi, M Davies, L Garcia, A Gaulton, ... Bioinformatics 30 (9), 1338-1339, 2014 | 191 | 2014 |
| BioModels: ten-year anniversary V Chelliah, N Juty, I Ajmera, R Ali, M Dumousseau, M Glont, M Hucka, ... Nucleic acids research 43 (D1), D542-D548, 2014 | 178 | 2014 |
| CellML metadata standards, associated tools and repositories DA Beard, R Britten, MT Cooling, A Garny, MDB Halstead, PJ Hunter, ... Philosophical Transactions of the Royal Society A: Mathematical, Physical …, 2009 | 80 | 2009 |
| Integrating systems biology models and biomedical ontologies R Hoehndorf, M Dumontier, JH Gennari, S Wimalaratne, B de Bono, ... BMC systems biology 5 (1), 124, 2011 | 69 | 2011 |
| BioModels: content, features, functionality, and use N Juty, R Ali, M Glont, S Keating, N Rodriguez, MJ Swat, SM Wimalaratne, ... CPT: pharmacometrics & systems pharmacology 4 (2), 55-68, 2015 | 63 | 2015 |
| COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project FT Bergmann, R Adams, S Moodie, J Cooper, M Glont, M Golebiewski, ... BMC bioinformatics 15 (1), 369, 2014 | 51 | 2014 |
| The RICORDO approach to semantic interoperability for biomedical data and models: strategy, standards and solutions B de Bono, R Hoehndorf, S Wimalaratne, G Gkoutos, P Grenon BMC Research Notes 4 (1), 313, 2011 | 44 | 2011 |
| A common layer of interoperability for biomedical ontologies based on OWL EL R Hoehndorf, M Dumontier, A Oellrich, S Wimalaratne, ... Bioinformatics 27 (7), 1001-1008, 2011 | 43 | 2011 |
| Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data JA McMurry, N Juty, N Blomberg, T Burdett, T Conlin, N Conte, M Courtot, ... PLoS biology 15 (6), e2001414, 2017 | 36 | 2017 |
| Pharmacometrics Markup Language (PharmML): opening new perspectives for model exchange in drug development MJ Swat, S Moodie, SM Wimalaratne, NR Kristensen, M Lavielle, A Mari, ... CPT: pharmacometrics & systems pharmacology 4 (6), 316-319, 2015 | 32 | 2015 |
| Model annotation for synthetic biology: automating model to nucleotide sequence conversion G Misirli, JS Hallinan, T Yu, JR Lawson, SM Wimalaratne, MT Cooling, ... Bioinformatics 27 (7), 973-979, 2011 | 30 | 2011 |
| A method for visualizing CellML models SM Wimalaratne, MDB Halstead, CM Lloyd, MT Cooling, EJ Crampin, ... Bioinformatics 25 (22), 3012-3019, 2009 | 21 | 2009 |
| BioModels: expanding horizons to include more modelling approaches and formats M Glont, TVN Nguyen, M Graesslin, R Hälke, R Ali, J Schramm, ... Nucleic acids research 46 (D1), D1248-D1253, 2017 | 19 | 2017 |
| Facilitating modularity and reuse: guidelines for structuring CellML 1.1 models by isolating common biophysical concepts SM Wimalaratne, MDB Halstead, CM Lloyd, MT Cooling, EJ Crampin, ... Experimental physiology 94 (5), 472-485, 2009 | 18 | 2009 |