Sarala M. Wimalaratne
Sarala M. Wimalaratne
EML-EBI
Verified email at ebi.ac.uk
TitleCited byYear
The systems biology graphical notation
N Le Novere, M Hucka, H Mi, S Moodie, F Schreiber, A Sorokin, E Demir, ...
Nature biotechnology 27 (8), 735, 2009
7322009
The systems biology graphical notation
N Le Novere, M Hucka, H Mi, S Moodie, F Schreiber, A Sorokin, E Demir, ...
Nature biotechnology 27 (8), 735, 2009
7322009
The BioPAX community standard for pathway data sharing
E Demir, MP Cary, S Paley, K Fukuda, C Lemer, I Vastrik, G Wu, ...
Nature biotechnology 28 (9), 935, 2010
5312010
The BioPAX community standard for pathway data sharing
E Demir, MP Cary, S Paley, K Fukuda, C Lemer, I Vastrik, G Wu, ...
Nature biotechnology 28 (9), 935, 2010
5312010
The BioPAX community standard for pathway data sharing
E Demir, MP Cary, S Paley, K Fukuda, C Lemer, I Vastrik, G Wu, ...
Nature biotechnology 28 (9), 935, 2010
5312010
Controlled vocabularies and semantics in systems biology
M Courtot, N Juty, C Knüpfer, D Waltemath, A Zhukova, A Dräger, ...
Molecular systems biology 7 (1), 543, 2011
2062011
The EBI RDF platform: linked open data for the life sciences
S Jupp, J Malone, J Bolleman, M Brandizi, M Davies, L Garcia, A Gaulton, ...
Bioinformatics 30 (9), 1338-1339, 2014
1852014
BioModels: ten-year anniversary
V Chelliah, N Juty, I Ajmera, R Ali, M Dumousseau, M Glont, M Hucka, ...
Nucleic acids research 43 (D1), D542-D548, 2014
1622014
CellML metadata standards, associated tools and repositories
DA Beard, R Britten, MT Cooling, A Garny, MDB Halstead, PJ Hunter, ...
Philosophical Transactions of the Royal Society A: Mathematical, Physical …, 2009
792009
Integrating systems biology models and biomedical ontologies
R Hoehndorf, M Dumontier, JH Gennari, S Wimalaratne, B de Bono, ...
BMC systems biology 5 (1), 124, 2011
672011
BioModels: content, features, functionality, and use
N Juty, R Ali, M Glont, S Keating, N Rodriguez, MJ Swat, SM Wimalaratne, ...
CPT: pharmacometrics & systems pharmacology 4 (2), 55-68, 2015
642015
COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project
FT Bergmann, R Adams, S Moodie, J Cooper, M Glont, M Golebiewski, ...
BMC bioinformatics 15 (1), 369, 2014
482014
The RICORDO approach to semantic interoperability for biomedical data and models: strategy, standards and solutions
B de Bono, R Hoehndorf, S Wimalaratne, G Gkoutos, P Grenon
BMC Research Notes 4 (1), 313, 2011
432011
A common layer of interoperability for biomedical ontologies based on OWL EL
R Hoehndorf, M Dumontier, A Oellrich, S Wimalaratne, ...
Bioinformatics 27 (7), 1001-1008, 2011
422011
Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data
JA McMurry, N Juty, N Blomberg, T Burdett, T Conlin, N Conte, M Courtot, ...
PLoS biology 15 (6), e2001414, 2017
332017
Pharmacometrics Markup Language (PharmML): opening new perspectives for model exchange in drug development
MJ Swat, S Moodie, SM Wimalaratne, NR Kristensen, M Lavielle, A Mari, ...
CPT: pharmacometrics & systems pharmacology 4 (6), 316-319, 2015
322015
Model annotation for synthetic biology: automating model to nucleotide sequence conversion
G Misirli, JS Hallinan, T Yu, JR Lawson, SM Wimalaratne, MT Cooling, ...
Bioinformatics 27 (7), 973-979, 2011
282011
A method for visualizing CellML models
SM Wimalaratne, MDB Halstead, CM Lloyd, MT Cooling, EJ Crampin, ...
Bioinformatics 25 (22), 3012-3019, 2009
212009
Facilitating modularity and reuse: guidelines for structuring CellML 1.1 models by isolating common biophysical concepts
SM Wimalaratne, MDB Halstead, CM Lloyd, MT Cooling, EJ Crampin, ...
Experimental physiology 94 (5), 472-485, 2009
192009
Biophysical annotation and representation of CellML models
SM Wimalaratne, MDB Halstead, CM Lloyd, EJ Crampin, PF Nielsen
Bioinformatics 25 (17), 2263-2270, 2009
172009
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Articles 1–20