| Circular RNA identification based on multiple seed matching Y Gao, J Zhang, F Zhao Briefings in bioinformatics 19 (5), 803-810, 2018 | 558 | 2018 |
| Comprehensive identification of internal structure and alternative splicing events in circular RNAs Y Gao, J Wang, Y Zheng, J Zhang, S Chen, F Zhao Nature communications 7 (1), 12060, 2016 | 277 | 2016 |
| Expanded expression landscape and prioritization of circular RNAs in mammals P Ji, W Wu, S Chen, Y Zheng, L Zhou, J Zhang, H Cheng, J Yan, S Zhang, ... Cell reports 26 (12), 3444-3460. e5, 2019 | 223 | 2019 |
| Accurate quantification of circular RNAs identifies extensive circular isoform switching events J Zhang, S Chen, J Yang, F Zhao Nature communications 11 (1), 90, 2020 | 196 | 2020 |
| Comprehensive profiling of circular RNAs with nanopore sequencing and CIRI-long J Zhang, L Hou, Z Zuo, P Ji, X Zhang, Y Xue, F Zhao Nature biotechnology 39 (7), 836-845, 2021 | 150 | 2021 |
| circVAMP3 drives CAPRIN1 phase separation and inhibits hepatocellular carcinoma by suppressing c‐Myc translation S Chen, X Cao, J Zhang, W Wu, B Zhang, F Zhao Advanced science 9 (8), 2103817, 2022 | 74 | 2022 |
| RNA-seq data science: From raw data to effective interpretation D Deshpande, K Chhugani, Y Chang, A Karlsberg, C Loeffler, J Zhang, ... Frontiers in Genetics 14, 997383, 2023 | 65 | 2023 |
| Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precision M Vromman, J Anckaert, S Bortoluzzi, A Buratin, CY Chen, Q Chu, ... Nature methods 20 (8), 1159-1169, 2023 | 44 | 2023 |
| Unfavourable intrauterine environment contributes to abnormal gut microbiome and metabolome in twins J Yang, L Hou, J Wang, L Xiao, J Zhang, N Yin, S Yao, K Cheng, W Zhang, ... Gut 71 (12), 2451-2462, 2022 | 39 | 2022 |
| Exploring the cellular landscape of circular RNAs using full-length single-cell RNA sequencing W Wu, J Zhang, X Cao, Z Cai, F Zhao Nature communications 13 (1), 3242, 2022 | 38 | 2022 |
| The oral microbiome of pregnant women facilitates gestational diabetes discrimination X Li, J Zheng, X Ma, B Zhang, J Zhang, W Wang, C Sun, Y Wang, J Zheng, ... Journal of Genetics and Genomics 48 (1), 32-39, 2021 | 30 | 2021 |
| Full-length circular RNA profiling by nanopore sequencing with CIRI-long L Hou, J Zhang, F Zhao Nature Protocols 18 (6), 1795-1813, 2023 | 18 | 2023 |
| Screening linear and circular RNA transcripts from stress granules S Chen, J Zhang, F Zhao Genomics, proteomics & bioinformatics 21 (4), 886-893, 2023 | 13 | 2023 |
| Reconstruction of circular RNAs using Illumina and Nanopore RNA-seq datasets J Zhang, F Zhao Methods 196, 17-22, 2021 | 10 | 2021 |
| Characterizing circular RNAs using nanopore sequencing J Zhang, F Zhao Trends in Biochemical Sciences, 785-786, 2021 | 9 | 2021 |
| P. Łabaj, P., & Mangul, S.(2023). RNA-seq data science: From raw data to effective interpretation D Deshpande, K Chhugani, Y Chang, A Karlsberg, C Loeffler, J Zhang, ... Frontiers in Genetics 14, 997383, 0 | 4 | |
| CIRI-hub: an integrated and visual analytics platform for circular RNAs in cancers W Wu, J Zhang, F Zhao bioRxiv, 2023.08. 09.552604, 2023 | 2 | 2023 |
| RNA-seq data science: From raw data to effective interpretation D Deshpande, K Chhugani, Y Chang, A Karlsberg, C Loeffler, J Zhang, ... arXiv preprint arXiv:2010.02391, 2020 | 2 | 2020 |
