Yu Ye
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Engineered diubiquitin synthesis reveals Lys29-isopeptide specificity of an OTU deubiquitinase
S Virdee, Y Ye, DP Nguyen, D Komander, JW Chin
Nature chemical biology 6 (10), 750-757, 2010
Ubiquitin chain conformation regulates recognition and activity of interacting proteins
Y Ye, G Blaser, MH Horrocks, MJ Ruedas-Rama, S Ibrahim, AA Zhukov, ...
Nature 492 (7428), 266-270, 2012
Polyubiquitin binding and cross‐reactivity in the USP domain deubiquitinase USP21
Y Ye, M Akutsu, F Reyes‐Turcu, RI Enchev, KD Wilkinson, D Komander
EMBO reports 12 (4), 350-357, 2011
Dissection of USP catalytic domains reveals five common insertion points
Y Ye, H Scheel, K Hofmann, D Komander
Molecular BioSystems 5 (12), 1797-1808, 2009
Molecular basis for ubiquitin and ISG15 cross-reactivity in viral ovarian tumor domains
M Akutsu, Y Ye, S Virdee, JW Chin, D Komander
Proceedings of the National Academy of Sciences 108 (6), 2228-2233, 2011
The UBAP1 subunit of ESCRT-I interacts with ubiquitin via a SOUBA domain
M Agromayor, N Soler, A Caballe, T Kueck, SM Freund, MD Allen, ...
Structure 20 (3), 414-428, 2012
Arachidonic acid mediates the formation of abundant alpha-helical multimers of alpha-synuclein
M Iljina, L Tosatto, ML Choi, JC Sang, Y Ye, CD Hughes, CE Bryant, ...
Scientific reports 6 (1), 1-14, 2016
Filamentous aggregates are fragmented by the proteasome holoenzyme
R Cliffe, JC Sang, F Kundel, D Finley, D Klenerman, Y Ye
Cell reports 26 (8), 2140-2149. e3, 2019
N-terminal ubiquitination of amyloidogenic proteins triggers removal of their oligomers by the proteasome holoenzyme
Y Ye, D Klenerman, D Finley
Journal of molecular biology 432 (2), 585-596, 2020
Sensitive light-sheet microscopy in multiwell plates using an AFM cantilever
A Ponjavic, Y Ye, E Laue, SF Lee, D Klenerman
Biomedical Optics Express 9 (12), 5863-5880, 2018
Single-molecule light-sheet microscopy with local nanopipette delivery
B Li, A Ponjavic, WH Chen, L Hopkins, C Hughes, Y Ye, C Bryant, ...
Analytical Chemistry 93 (8), 4092-4099, 2021
A General in Vitro Assay for Studying Enzymatic Activities of the Ubiquitin System
Y Zuo, BK Chong, K Jiang, D Finley, D Klenerman, Y Ye
Biochemistry 59 (7), 851-861, 2020
Fluorescent-labelled diubiquitin substrate for a deubiquitinase assay
D Komander, Y Ye
US Patent App. 13/710,789, 2013
Hyperphosphorylated tau self-assembles into amorphous aggregates eliciting TLR4-dependent inflammatory responses
D Klenerman, J Meng, Y Zhang, D Saman, S De, J Sang, K Jiang, ...
A Potential Mechanism for Targeting Aggregates With Proteasomes and Disaggregases in Liquid Droplets
EM Hayes, L Sirvio, Y Ye
Frontiers in Aging Neuroscience 14, 2022
Membrane potential regulates the dynamic localisation of mammalian proteasomes
Y Zhang, AH Lippert, JE Lee, AR Carr, A Ponjavic, SF Lee, D Finley, ...
bioRxiv, 487702, 2018
Hyperphosphorylated tau self-assembles into amorphous aggregates eliciting TLR4-dependent inflammatory responses Author list
JX Meng, Y Zhang, D Saman, S De, JC Sang, K Jiang, J Humphrey, ...
The ubiquitin-proteasome system and disaggregase machineries in liquid droplets: a potential mechanism to target protein aggregation
Y Ye, EM Hayes, L Sirvio
Frontiers in Aging Neuroscience, 210, 0
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