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Ted Liefeld
Ted Liefeld
UCSD School of Medicine
Verified email at cloud.ucsd.edu
Title
Cited by
Cited by
Year
The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity
J Barretina, G Caponigro, N Stransky, K Venkatesan, AA Margolin, S Kim, ...
Nature 483 (7391), 603-607, 2012
77212012
The landscape of somatic copy-number alteration across human cancers
R Beroukhim, CH Mermel, D Porter, G Wei, S Raychaudhuri, J Donovan, ...
Nature 463 (7283), 899-905, 2010
41912010
GenePattern 2.0
M Reich, T Liefeld, J Gould, J Lerner, P Tamayo, JP Mesirov
Nature genetics 38 (5), 500-501, 2006
22422006
Initial genome sequencing and analysis of multiple myeloma
MA Chapman, MS Lawrence, JJ Keats, K Cibulskis, C Sougnez, ...
Nature 471 (7339), 467-472, 2011
16882011
Densely interconnected transcriptional circuits control cell states in human hematopoiesis
N Novershtern, A Subramanian, LN Lawton, RH Mak, WN Haining, ...
Cell 144 (2), 296-309, 2011
10472011
An interactive resource to identify cancer genetic and lineage dependencies targeted by small molecules
A Basu, NE Bodycombe, JH Cheah, EV Price, K Liu, GI Schaefer, ...
Cell 154 (5), 1151-1161, 2013
7302013
Correlating chemical sensitivity and basal gene expression reveals mechanism of action
MG Rees, B Seashore-Ludlow, JH Cheah, DJ Adams, EV Price, S Gill, ...
Nature chemical biology 12 (2), 109-116, 2016
7092016
Harnessing connectivity in a large-scale small-molecule sensitivity dataset
B Seashore-Ludlow, MG Rees, JH Cheah, M Cokol, EV Price, ME Coletti, ...
Cancer discovery 5 (11), 1210-1223, 2015
6472015
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies
GS Cowley, BA Weir, F Vazquez, P Tamayo, JA Scott, S Rusin, ...
Scientific data 1 (1), 1-12, 2014
4632014
Globally distributed object identification for biological knowledgebases
T Clark, S Martin, T Liefeld
Briefings in bioinformatics 5 (1), 59-70, 2004
2132004
Cytoscape: the network visualization tool for GenomeSpace workflows
B Demchak, T Hull, M Reich, T Liefeld, M Smoot, T Ideker, JP Mesirov
F1000Research 3, 2014
1822014
Computational knowledge integration in biopharmaceutical research
D Ficenec, M Osborne, J Pradines, D Richards, R Felciano, RJ Cho, ...
Briefings in bioinformatics 4 (3), 260-278, 2003
552003
GeNets: a unified web platform for network-based genomic analyses
T Li, A Kim, J Rosenbluh, H Horn, L Greenfeld, D An, A Zimmer, ...
Nature methods 15 (7), 543-546, 2018
532018
Integrative genomic analysis by interoperation of bioinformatics tools in GenomeSpace
K Qu, S Garamszegi, F Wu, H Thorvaldsdottir, T Liefeld, M Ocana, ...
Nature methods 13 (3), 245-247, 2016
482016
The GenePattern notebook environment
M Reich, T Tabor, T Liefeld, H Thorvaldsdóttir, B Hill, P Tamayo, ...
Cell systems 5 (2), 149-151. e1, 2017
402017
The impact of Life Science Identifier on informatics data
S Martin, MM Hohman, T Liefeld
Drug discovery today 10 (22), 1566-1572, 2005
342005
GeneCruiser: a web service for the annotation of microarray data
T Liefeld, M Reich, J Gould, P Zhang, P Tamayo, JP Mesirov
Bioinformatics 21 (18), 3681-3682, 2005
292005
GenePattern flow cytometry suite
J Spidlen, A Barsky, K Breuer, P Carr, MD Nazaire, BA Hill, Y Qian, ...
Source code for biology and medicine 8, 1-8, 2013
252013
NASA GeneLab RNA-seq consensus pipeline: standardized processing of short-read RNA-seq data
EG Overbey, AM Saravia-Butler, Z Zhang, KS Rathi, H Fogle, ...
Iscience 24 (4), 2021
212021
Imaging-AMARETTO: an imaging genomics software tool to interrogate multiomics networks for relevance to radiography and histopathology imaging biomarkers of clinical outcomes
O Gevaert, M Nabian, S Bakr, C Everaert, J Shinde, A Manukyan, ...
JCO clinical cancer informatics 4, 421-435, 2020
82020
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