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Gerry Tonkin-Hill
Gerry Tonkin-Hill
Wellcome Sanger Institute
Verified email at sanger.ac.uk - Homepage
Title
Cited by
Cited by
Year
Producing polished prokaryotic pangenomes with the Panaroo pipeline
G Tonkin-Hill, N MacAlasdair, C Ruis, A Weimann, G Horesh, JA Lees, ...
Genome biology 21, 1-21, 2020
4482020
Fast and flexible bacterial genomic epidemiology with PopPUNK
JA Lees, SR Harris, G Tonkin-Hill, RA Gladstone, SW Lo, JN Weiser, ...
Genome research 29 (2), 304-316, 2019
2622019
RhierBAPS: An R implementation of the population clustering algorithm hierBAPS
G Tonkin-Hill, JA Lees, SD Bentley, SDW Frost, J Corander
Wellcome Open Research 3, 2018
1982018
Fast hierarchical Bayesian analysis of population structure
G Tonkin-Hill, JA Lees, SD Bentley, SDW Frost, J Corander
Nucleic acids research 47 (11), 5539-5549, 2019
1902019
An integrated national scale SARS-CoV-2 genomic surveillance network
T COVID
The Lancet. Microbe 1 (3), e99, 2020
1702020
Patterns of within-host genetic diversity in SARS-CoV-2
G Tonkin-Hill, I Martincorena, R Amato, ARJ Lawson, M Gerstung, ...
Elife 10, e66857, 2021
1292021
Apparent nosocomial adaptation of Enterococcus faecalis predates the modern hospital era
AK Pöntinen, J Top, S Arredondo-Alonso, G Tonkin-Hill, AR Freitas, ...
Nature Communications 12 (1), 1-13, 2021
882021
The Plasmodium falciparum transcriptome in severe malaria reveals altered expression of genes involved in important processes including surface antigen–encoding var genes
GQ Tonkin-Hill, L Trianty, R Noviyanti, HHT Nguyen, BF Sebayang, ...
PLoS biology 16 (3), e2004328, 2018
732018
A comprehensive and high-quality collection of Escherichia coli genomes and their genes
G Horesh, GA Blackwell, G Tonkin-Hill, J Corander, E Heinz, ...
Microbial genomics 7 (2), 2021
572021
The inner ear proteome of fish
ORB Thomas, SE Swearer, EA Kapp, P Peng, GQ Tonkin‐Hill, ...
The FEBS journal 286 (1), 66-81, 2019
542019
Emergence and dissemination of antimicrobial resistance in Escherichia coli causing bloodstream infections in Norway in 2002–17: a nationwide, longitudinal, microbial …
RA Gladstone, A McNally, AK Pöntinen, G Tonkin-Hill, JA Lees, K Skytén, ...
The Lancet Microbe 2 (7), e331-e341, 2021
522021
Genome-wide epistasis and co-selection study using mutual information
J Pensar, S Puranen, B Arnold, N MacAlasdair, J Kuronen, G Tonkin-Hill, ...
Nucleic acids research 47 (18), e112-e112, 2019
402019
Pneumococcal within-host diversity during colonization, transmission and treatment
G Tonkin-Hill, C Ling, C Chaguza, SJ Salter, P Hinfonthong, E Nikolaou, ...
Nature Microbiology 7 (11), 1791-1804, 2022
312022
Population genomics of virulence genes of Plasmodium falciparum in clinical isolates from Uganda
S Ruybal-Pesántez, KE Tiedje, G Tonkin-Hill, TS Rask, MR Kamya, ...
Scientific reports 7 (1), 1-12, 2017
312017
Genomic epidemiology of COVID-19 in care homes in the east of England
WL Hamilton, G Tonkin-Hill, ER Smith, D Aggarwal, CJ Houldcroft, ...
Elife 10, e64618, 2021
28*2021
A high parasite density environment induces transcriptional changes and cell death in Plasmodium falciparum blood stages
ES Chou, SZ Abidi, M Teye, A Leliwa‐Sytek, TS Rask, SA Cobbold, ...
The FEBS journal 285 (5), 848-870, 2018
252018
Tentacle transcriptomes of the speckled anemone (Actiniaria: Actiniidae: Oulactis Sp.): Venom-related components and their domain structure
ML Mitchell, GQ Tonkin-Hill, RAV Morales, AW Purcell, AT Papenfuss, ...
Marine Biotechnology 22 (2), 207-219, 2020
242020
The use of imaging mass spectrometry to study peptide toxin distribution in Australian sea anemones
ML Mitchell, BR Hamilton, B Madio, RAV Morales, GQ Tonkin-Hill, ...
Australian Journal of Chemistry 70 (11), 1235-1237, 2017
232017
Bacterial genome-wide association study of hyper-virulent pneumococcal serotype 1 identifies genetic variation associated with neurotropism
C Chaguza, M Yang, JE Cornick, M du Plessis, RA Gladstone, ...
Communications Biology 3 (1), 1-12, 2020
202020
Common virulence gene expression in adult first-time infected malaria patients and severe cases
JS Wichers, G Tonkin-Hill, T Thye, R Krumkamp, B Kreuels, J Strauss, ...
Elife 10, e69040, 2021
192021
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