| An atlas of alternative splicing profiles and functional associations reveals new regulatory programs and genes that simultaneously express multiple major isoforms J Tapial, KCH Ha, T Sterne-Weiler, A Gohr, U Braunschweig, ... Genome research 27 (10), 1759-1768, 2017 | 427 | 2017 |
| LncATLAS database for subcellular localization of long noncoding RNAs D Mas-Ponte, J Carlevaro-Fita, E Palumbo, TH Pulido, R Guigo, ... Rna 23 (7), 1080-1087, 2017 | 316 | 2017 |
| Whole genome sequencing of turbot (Scophthalmus maximus; Pleuronectiformes): a fish adapted to demersal life A Figueras, D Robledo, A Corvelo, M Hermida, P Pereiro, JA Rubiolo, ... DNA research 23 (3), 181-192, 2016 | 188 | 2016 |
| A novel subfamily of mouse cytosolic carboxypeptidases E Kalinina, R Biswas, I Berezniuk, A Hermoso, FX Aviles, LD Flicker The FASEB Journal 21 (3), 836-850, 2007 | 158 | 2007 |
| GREENC: a Wiki-based database of plant lncRNAs AP Gallart, AH Pulido, IAM de Lagrán, W Sanseverino, RA Cigliano Nucleic acids research 44 (Database issue), D1161, 2015 | 156 | 2015 |
| GREENC: a Wiki-based database of plant lncRNAs A Paytuví Gallart, A Hermoso Pulido, I Anzar Martínez de Lagrán, ... Nucleic acids research 44 (D1), D1161-D1166, 2016 | 122 | 2016 |
| Nnal‐like proteins are active metallocarboxypeptidases of a new and diverse M14 subfamily MR dela Vega, RG Sevilla, A Hermoso, J Lorenzo, S Tanco, A Diez, ... The FASEB Journal 21 (3), 851-865, 2007 | 118 | 2007 |
| Citizen science charts two major “stomatotypes” in the oral microbiome of adolescents and reveals links with habits and drinking water composition JR Willis, P González-Torres, AA Pittis, LA Bejarano, L Cozzuto, ... Microbiome 6, 1-17, 2018 | 117 | 2018 |
| PRGdb 2.0: towards a community-based database model for the analysis of R-genes in plants W Sanseverino, A Hermoso, R D’Alessandro, A Vlasova, G Andolfo, ... Nucleic acids research 41 (D1), D1167-D1171, 2012 | 113 | 2012 |
| Scalable design of paired CRISPR guide RNAs for genomic deletion C Pulido-Quetglas, E Aparicio-Prat, C Arnan, T Polidori, T Hermoso, ... PLoS computational biology 13 (3), e1005341, 2017 | 103 | 2017 |
| ArchDB: automated protein loop classification as a tool for structural genomics J Espadaler, N Fernandez‐Fuentes, A Hermoso, E Querol, FX Aviles, ... Nucleic acids research 32 (suppl_1), D185-D188, 2004 | 86 | 2004 |
| MasterOfPores: a workflow for the analysis of Oxford nanopore direct RNA sequencing datasets L Cozzuto, H Liu, LP Pryszcz, TH Pulido, A Delgado-Tejedor, ... Frontiers in Genetics 11, 211, 2020 | 55 | 2020 |
| QCloud2: an improved cloud-based quality-control system for mass-spectrometry-based proteomics laboratories R Olivella, C Chiva, M Serret, D Mancera, L Cozzuto, A Hermoso, ... Journal of proteome research 20 (4), 2010-2013, 2021 | 46 | 2021 |
| Bioinformatics and moonlighting proteins S Hernández, L Franco, A Calvo, G Ferragut, A Hermoso, I Amela, ... Frontiers in bioengineering and biotechnology 3, 90, 2015 | 42 | 2015 |
| MyMpn: a database for the systems biology model organism Mycoplasma pneumoniae JAH Wodke, A Alibés, L Cozzuto, A Hermoso, E Yus, M Lluch-Senar, ... Nucleic acids research 43 (D1), D618-D623, 2015 | 38 | 2015 |
| Genome‐wide transcriptomic changes reveal the genetic pathways involved in insect migration T Doyle, E Jimenez‐Guri, WLS Hawkes, R Massy, F Mantica, J Permanyer, ... Molecular ecology 31 (16), 4332-4350, 2022 | 29 | 2022 |
| TrSDB: a proteome database of transcription factors A Hermoso, D Aguilar, FX Aviles, E Querol Nucleic acids research 32 (suppl_1), D171-D173, 2004 | 24 | 2004 |
| SuperFly: a comparative database for quantified spatio-temporal gene expression patterns in early dipteran embryos D Cicin-Sain, AH Pulido, A Crombach, KR Wotton, E Jiménez-Guri, ... Nucleic Acids Research 43 (D1), D751-D755, 2015 | 20 | 2015 |
| Can bioinformatics help in the identification of moonlighting proteins? S Hernández, A Calvo, G Ferragut, L Franco, A Hermoso, I Amela, ... Biochemical Society Transactions 42 (6), 1692-1697, 2014 | 16 | 2014 |
| Nanopore direct RNA sequencing data processing and analysis using MasterOfPores L Cozzuto, A Delgado-Tejedor, T Hermoso Pulido, EM Novoa, ... Computational Epigenomics and Epitranscriptomics, 185-205, 2023 | 14 | 2023 |
Julia PonomarenkoCentre for Genomic Regulation (CRG), Barcelona, SpainVerified email at crg.eu
