Rainer Breitling

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	All	Since 2016
Citations	19128	10056
h-index	62	43
i10-index	152	116

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Co-authors

Eriko TakanoProfessor of Synthetic Biology, Manchester Institute of Biotechnology, University of ManchesterVerified email at manchester.ac.uk
Marnix MedemaAssistant Professor at Wageningen UniversityVerified email at wur.nl
ritsert jansenProfessor of Bioinformatics, Dean of Talent DevelopmentVerified email at rug.nl
Andris JankevicsExperimental Officer, Phenome Centre Birmingham,University of BirminghamVerified email at bham.ac.uk
David GilbertProfessor of Computer Science, Brunel UniversityVerified email at brunel.ac.uk
Pawel HerzykSenior Lecturer & Head of Sequencing, MCSB and Glasgow Polyomics at the University of GlasgowVerified email at glasgow.ac.uk
Richard ScheltemaUtrecht UniversityVerified email at uu.nl
Tilmann WeberProfessor / Co-PI @ DTU Biosustain, Technical University of DenmarkVerified email at biosustain.dtu.dk
Kai BlinResearcher at the Novo Nordisk Foundation Center for BiosustainabilityVerified email at biosustain.dtu.dk
Patrick ArmengaudGlasgow, Amiens, Versailles, MontpellierVerified email at versailles.inra.fr
Yang Li, PhDProfessor, Director of CiiM, Helmholtz Centre for Infection Research (HZI)Verified email at helmholtz-hzi.de
Darren CreekAssociate Professor, Drug Delivery, Disposition & Dynamics, Monash Institute of PharmaceuticalVerified email at monash.edu
David George WatsonStrathclydeVerified email at strath.ac.uk
Michael A FischbachStanford UniversityVerified email at fischbachgroup.org
Nigel ScruttonProfessor of Enzymology, Manchester Institute of Biotechnology (MIB) and School of ChemistryVerified email at manchester.ac.uk
Karl BurgessSenior Lecturer, University of EdinburghVerified email at ed.ac.uk
Ronald PlasterkVerified email at tiscali.nl
Mohammad Tauqeer AlamWarwick Medical School, University of WarwickVerified email at warwick.ac.uk
Jingyuan Fu, PhDAssociate Professor, University Medical Center Groningen, NetherlandsVerified email at umcg.nl
Fiona AchcarUniversity of GlasgowVerified email at glasgow.ac.uk

Rainer Breitling

Professor of Systems Biology, Manchester Institute of Biotechnology, University of Manchester

Verified email at manchester.ac.uk - Homepage

Systems Biology Dynamic Modelling Metabolomics Transcriptomics Synthetic Biology


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Rank products: a simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments R Breitling, P Armengaud, A Amtmann, P Herzyk FEBS letters 573 (1-3), 83-92, 2004	1625	2004
antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters T Weber, K Blin, S Duddela, D Krug, HU Kim, R Bruccoleri, SY Lee, ... Nucleic acids research 43 (W1), W237-W243, 2015	1615	2015
antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences MH Medema, K Blin, P Cimermancic, V de Jager, P Zakrzewski, ... Nucleic Acids Research 39 (suppl 2), W339-W346, 2011	1195	2011
antiSMASH 4.0—improvements in chemistry prediction and gene cluster boundary identification K Blin, T Wolf, MG Chevrette, X Lu, CJ Schwalen, SA Kautsar, ... Nucleic acids research 45 (W1), W36-W41, 2017	804	2017
antiSMASH 2.0—a versatile platform for genome mining of secondary metabolite producers K Blin, MH Medema, D Kazempour, MA Fischbach, R Breitling, E Takano, ... Nucleic acids research 41 (W1), W204-W212, 2013	800	2013
RankProd: a bioconductor package for detecting differentially expressed genes in meta-analysis F Hong, R Breitling, CW McEntee, BS Wittner, JL Nemhauser, J Chory Bioinformatics 22 (22), 2825-2827, 2006	726	2006
Minimum information about a biosynthetic gene cluster MH Medema, R Kottmann, P Yilmaz, M Cummings, JB Biggins, K Blin, ... Nature chemical biology 11 (9), 625-631, 2015	475	2015
The potassium-dependent transcriptome of Arabidopsis reveals a prominent role of jasmonic acid in nutrient signaling P Armengaud, R Breitling, A Amtmann Plant physiology 136 (1), 2556-2576, 2004	474	2004
Mass appeal: metabolite identification in mass spectrometry-focused untargeted metabolomics WB Dunn, A Erban, RJM Weber, DJ Creek, M Brown, R Breitling, ... Metabolomics 9 (1), 44-66, 2013	437	2013
C. elegans model identifies genetic modifiers of α-synuclein inclusion formation during aging TJ Van Ham, KL Thijssen, R Breitling, RMW Hofstra, RHA Plasterk, ... PLoS genetics 4 (3), e1000027, 2008	345	2008
Regulation of ubiquitin-binding proteins by monoubiquitination D Hoeller, N Crosetto, B Blagoev, C Raiborg, R Tikkanen, S Wagner, ... Nature cell biology 8 (2), 163-169, 2006	339	2006
Mapping determinants of gene expression plasticity by genetical genomics in C. elegans Y Li, OA Alvarez, EW Gutteling, M Tijsterman, J Fu, JAG Riksen, ... PLoS Genet 2 (12), e222, 2006	299	2006
Toward Global Metabolomics Analysis with Hydrophilic Interaction Liquid Chromatography–Mass Spectrometry: Improved Metabolite Identification by Retention Time Prediction DJ Creek, A Jankevics, R Breitling, DG Watson, MP Barrett, KEV Burgess Analytical chemistry 83 (22), 8703-8710, 2011	295	2011
GeneRank: Using search engine technology for the analysis of microarray experiments M Julie, B Rainer, H Desmond, G David BMC Bioinformatics 6, 2005	286	2005
A comparison of meta-analysis methods for detecting differentially expressed genes in microarray experiments F Hong, R Breitling Bioinformatics 24 (3), 374-382, 2008	268	2008
PeakML/mzMatch: a file format, Java library, R library, and tool-chain for mass spectrometry data analysis RA Scheltema, A Jankevics, RC Jansen, MA Swertz, R Breitling Analytical Chemistry-Columbus 83 (7), 2786, 2011	261	2011
System-wide molecular evidence for phenotypic buffering in Arabidopsis J Fu, JJB Keurentjes, H Bouwmeester, T America, FWA Verstappen, ... Nature genetics 41 (2), 166-167, 2009	256	2009
IDEOM: an Excel interface for analysis of LC–MS-based metabolomics data DJ Creek, A Jankevics, KEV Burgess, R Breitling, MP Barrett Bioinformatics 28 (7), 1048-1049, 2012	243	2012
Detecting sequence homology at the gene cluster level with MultiGeneBlast MH Medema, E Takano, R Breitling Molecular biology and evolution 30 (5), 1218-1223, 2013	219	2013
Computational tools for the synthetic design of biochemical pathways MH Medema, R van Raaphorst, E Takano, R Breitling Nature Reviews Microbiology, 2012	217	2012

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